Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00243 ATGGACGATGGTGGACATCGAGAGAATGGAAGGCACAAAACAGATCACTATAAGTCAGCTCAGGGCCAGTGGATGATGCAGCATCAGCCATCAATGAAGCAGATAATGACGATTATGGCTGAAAGAGATGCAGCCATTCAAGAGAGGAATTTAGCCCTTTCAGAGAAAAAGGCTGCATTAGCAGAGCGAGACATGGCTTTTCTACAGCGAGATGCTGCAATTGCAGAGAGGAACAACGCCCTATTGGAAAGAGACAATGCCATTGCAACTCTTCAGTATCGTGATAACTCCCTACCAAATAACAGTTTATCATGTCCACCAGGATGCCAAATCGCTAGAGGAGTGAAGCATATACATCACCCACAGCAGCACACAGTTCATATGCCCCATATGAATGAAAGTAATTACAATTCGAGAGAAATGCATCCAAATGAAGCTTCCCCGGTATCCCCAGTTGCTTCTGAATTGACGAAGACACGACGAAAGAAGCGAACACAGGAGGGAAAGACCGTTACAACTCCGAACAAGAAGGTTTCAAAAGCTCCAAGGAAGGTCAAAAGAGAGGGTGAAGACTTGAATAAGGTAATGGTGGGCAAGGCTCATGGAATTGGTAATGATCACAAACAGTCAGATTGGAAAGGCCAAGATCTGGGATTGAATCAGGTAGCCTTTGATGAATCTACCATGCCAGCACCAATATGCTCCTGCACAGGAGTTATAAGACAGTGCTACAAATGGGGAAATGGTGGATGGCAGTCTGCATGTTGTACTACCACCATCTCAATGTATCCATTACCAGCAGTTCCCAATAAACGACATGCACGACTTGGTGGTCGCAAGATGAGCGGAAGCGCCTTTAACAAGTTGCTTAACCGCCTCGCAGCTGAAGGCCACGATCTTTCAGCTCCAGTTGATCTTAAGAATAACTGGGCAAAGCATGGAACAAACCGTTACATCACCATAAAGTAG 969 45.51 MDDGGHRENGRHKTDHYKSAQGQWMMQHQPSMKQIMTIMAERDAAIQERNLALSEKKAALAERDMAFLQRDAAIAERNNALLERDNAIATLQYRDNSLPNNSLSCPPGCQIARGVKHIHHPQQHTVHMPHMNESNYNSREMHPNEASPVSPVASELTKTRRKKRTQEGKTVTTPNKKVSKAPRKVKREGEDLNKVMVGKAHGIGNDHKQSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHARLGGRKMSGSAFNKLLNRLAAEGHDLSAPVDLKNNWAKHGTNRYITIK 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1314902 1315956 + Cp4.1LG11g02390.1 Cpe11g00243 477037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00243 322 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 322 - -
Cpe11g00243 322 Pfam GAGA binding protein-like family 1 322 IPR010409 -
Cpe11g00243 322 MobiDBLite consensus disorder prediction 1 20 - -
Cpe11g00243 322 MobiDBLite consensus disorder prediction 138 154 - -
Cpe11g00243 322 PANTHER - 1 322 IPR010409 -
Cpe11g00243 322 Coils Coil 51 85 - -
Cpe11g00243 322 MobiDBLite consensus disorder prediction 138 185 - -
Cpe11g00243 322 MobiDBLite consensus disorder prediction 156 170 - -
Cpe11g00243 322 SMART GAGA_bind_2 1 322 IPR010409 -
Cpe11g00243 322 MobiDBLite consensus disorder prediction 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00243 - - - csv:101207697 561.222
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00376 Cpe11g00243 CCT
Cpe07g00376 Cpe11g00243 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01864 Cpe-Chr1:15958613 Cpe11g00243 Cpe-Chr11:1314902 7.33E-40 dispersed
Cpe11g00243 Cpe-Chr11:1314902 Cpe13g00435 Cpe-Chr13:4680757 7.96E-40 dispersed
Cpe11g00243 Cpe-Chr11:1314902 Cpe15g00568 Cpe-Chr15:6487237 2.12E-121 wgd
Cpe11g00243 Cpe-Chr11:1314902 Cpe04g00095 Cpe-Chr4:874267 9.38E-123 wgd
Cpe11g00243 Cpe-Chr11:1314902 Cpe07g00376 Cpe-Chr7:2428775 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1060 . . . . . . . . Cmo05g00298 Cmo12g00369 . . . Car12g00396 . . Cpe07g00376 Bhi04g00239 . . . . . . . . . . . . . . . . . . . . . Blo17g00751 . Bda08g01227 Bda01g01528 Bpe02g01724 Bpe05g00134 . . . . . . Cma05g00293 Car05g00242 . Cpe11g00243 . . . . . . . . . . . . . . . . Csa02g02118 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe13g00435 CCT 298 578 BBR/BPC Transcription factor family AT2G01930 54.7 7.5e-81 297.7
Cpe01g01864 CCT 305 584 BBR/BPC Transcription factor family AT2G01930 53.7 1.2e-78 290.4
Cpe13g00435 CCT 458 578 BBR/BPC Transcription factor family AT2G35550 60.3 7.2e-42 167.9
Cpe01g01864 CCT 158 276 BBR/BPC Transcription factor family AT2G35550 58.8 1.0e-40 164.1
Cpe07g00376 CCT,ECH 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.4e-37 153.7
Cpe04g00095 CST 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.1e-37 152.5
Cpe11g00243 CCT,ECH 213 322 BBR/BPC Transcription factor family AT2G35550 60.9 4.1e-37 152.1
Cpe15g00568 CST 203 309 BBR/BPC Transcription factor family AT2G35550 58.9 5.3e-37 151.8
Cpe07g00376 CCT,ECH 239 345 BBR/BPC Transcription factor family AT1G68120 57.9 2.2e-37 153.3
Cpe04g00095 CST 1 313 BBR/BPC Transcription factor family AT2G21240 63.5 1.1e-82 303.9
Cpe15g00568 CST 1 309 BBR/BPC Transcription factor family AT2G21240 61.3 1.1e-79 293.9
Cpe11g00243 CCT,ECH 1 322 BBR/BPC Transcription factor family AT2G21240 51.5 5.7e-63 238.4
Cpe04g00095 CST 1 313 BBR/BPC Transcription factor family AT4G38910 60.1 4.2e-71 265.4
Cpe15g00568 CST 1 309 BBR/BPC Transcription factor family AT4G38910 60.0 5.3e-66 248.4
Cpe11g00243 CCT,ECH 1 322 BBR/BPC Transcription factor family AT4G38910 51.2 6.9e-58 221.5
Cpe07g00376 CCT,ECH 91 345 BBR/BPC Transcription factor family AT5G42520 64.7 1.0e-82 303.9
Cpe11g00243 CCT,ECH 88 322 BBR/BPC Transcription factor family AT5G42520 57.1 5.6e-76 281.6
Cpe13g00435 CCT 458 578 BBR/BPC Transcription factor family AT2G35550 60.3 7.2e-42 167.9
Cpe01g01864 CCT 158 276 BBR/BPC Transcription factor family AT2G35550 58.8 1.0e-40 164.1
Cpe07g00376 CCT,ECH 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.4e-37 153.7
Cpe04g00095 CST 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.1e-37 152.5
Cpe11g00243 CCT,ECH 213 322 BBR/BPC Transcription factor family AT2G35550 60.9 4.1e-37 152.1
Cpe15g00568 CST 203 309 BBR/BPC Transcription factor family AT2G35550 58.9 5.3e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50215 PF06217 GAGA_bind 1.10E-107 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00243 Cpe_Chr11 FPKM 10.552761 12.400219 11.263967 12.144771 14.978313 11.817281 11.225232 18.041592 16.026705 14.63107