Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00244 ATGGGGAGGCCTCGCTCATGCTTTCAAATAATCACATGTGGTAGCGATTCAAAGGACAAAGATGAGATCGATGTACTTGAGAGTAAGGATTCGAAAGACAAACGAGCCTGGAGTTTTCGTAAGAAATCTTCCCAGCATCGTGTGCTCAACAACACTGTAATCGCAGAAACTCCTGCTGCAGAGAAGGAGAATCTTGAAACTACTACCTTCGACTTCCAATCATCACCTAGCTCCACTGTTCCTGAGAAACCCACTGTAATTCACTTCACTAATGAGGAGACCCATGTGCCTAACGTTGAGAATCCTAAAGGATCTGATAAGGTGGATGATGCATCCGAAATTGAAAGTAAGGTTGATAGTGAGGTTGAGGAGGCTATTGTTGTTGTCATCCAGGCTGGTGTCAGGGGGCTCTTGGCACAGAGGGAGCTGCTTAAACTCAAGAATGTCATAAAAGTGCAAGCTGCTGTTCGTGGGTTCTTGGTAAGGAGACATGCTGTGGGAACACTTCGCTGTGCTCAAGCCATTGTCAAAATGCAAGCTATTGTACGTGCTCGTCGTGCTCGTCTCTCTCCTGGGGGATCAGCTCCAGATGAGCTGCATAAGAAGAATGAGAAGGAAAATCCTGGTTCAAAAATCACGGTGAAGGGAGGGAAAACAAAATCCAATTTGAGATATATTTCAATTGAAAAGCTACTTAGCAATAATTTTGCCCGGCAGTTGTTGGAATCAACACCAAGGAACAACCCAATCAAAATCAAGTGTGATCCTTCCAAAAACGACTCTGCTTGGAAATGGTTGGAGCGCTGGATGGCTGTTTCATCATCGGATGTCTTGGAGCCGAAGGAAGAAGAACTAGTCCCTGATCAATTGGAAAAAGAAACCGAGGAGCTGAAGAAAGAAGAATCAGACACTGAGCTAACGAAAGGAGAAATCGAGGAGTCTCATGCTGAGGATCGAATTGACTCAAAAGCTTTGTCTGAAACAGAAGATTTGAACTCCAGCACCATTAAATCAGTTTCACCATCTGAAAGTGAAGATTTAATGACTTGTGACGCAGATAACTTACAATCTCAGACCAGCTGCTCTCAATCTTCATTAGTGAAAGATAATCTGGAGCAGCCTCTTCCAGAGACTGCTAGAACAGCTGAAGCTAAAGAGATATCAACTAAGGTTAGTTCTGTTCAAGATCAGAAAATACAGATGGATGATGTAGGTTTACAAACAGAGTCGAATCCTCTGAAAAGATTAGCCCCCGAACAACTGGAGAATGAGGGTAAGAAATTTGTGCTTGGATTAAGGAAGGTGAACAATCCATCATTTATCAATGCCCAGGAAAAATTTGAACAGCTGAGTTCACCATCATATTCAACTGGAACAATTAGATCAATGTATCAAGATGATGGAATTGAACCTCATTCTGAAACAGTATCATCCACAACAGATACTTTACCGAGGACGAAGGAGTCAAGTGCAGATGAAAATATTGTCCTTCCGGCATCTAGGATAGTTCAAGTTGGTGTCTCTGAATGTGGCACCGAGCTCTCTATTTCTTCCACCCTTGATTCACCTGATATATCCGAAGCAGGAGTGGCAGATCCACATGAAAATGATGTTTCAAAGAAAGGAGTCCAAGATCCTAGCAGTGATCTAATCACGGAAGTTGAAGTCCAGGGTTCTATTACCCCAATGCAAAAGGGTACCCAACTTCTTGTGGATCAACCAGAAGAAGTTAGTGAATCTAATGGCCATTCCATCACTTCAGTAGCTGTTGTAGACTCTGCACCAGAAGTTAGTGAATCAAAGCTAGAGAGAAGTTCATCAGATCAACAGAGAGAAAAGGAGGCTGATACGGGTCATGATCATCAAACATATAGATCATCTCCAGAAGCTTCTCCAAGAAGCCATTTAAATGTCCCAGAATCTCAAGGAACACCGTCTAGTCAGGTATCAATCAAGGCTAAACGGGATAAAACTGATAAGAGCCAAAAGCAAAAGTCTCCATCAGCTGGAAAGAAATCACCATCCAGTTTAAATTGCAATTCTGGCACGAGGAGTAGTACAGATAATTCTTACAAAGATCAGAAGACTGGGAAGAGAAGAAACTCATTTGATTCAGCACGACCGGAAAATGTTGAAAAGGAATTAAAAGAGAGCATTAGTAGTAACTCTCTTCCTCACTTCATGCAAGCCACACAATCTGCTAGAGCCAAGGCCTCAATCAACTCCCCAAGATCAAGTCCGGATGTTCAAGATGGAGAATTATACATCAAGAAAAGGCATTCCTTACCTGCTGATGGCCGGCAAGGATCTCCACGCATTCAGCAGTCAACATCTCGAACCCAGCAGGGAGTGAAGGGAAATGAGAAAATGTGGCGAAGGTAA 2382 42.91 MGRPRSCFQIITCGSDSKDKDEIDVLESKDSKDKRAWSFRKKSSQHRVLNNTVIAETPAAEKENLETTTFDFQSSPSSTVPEKPTVIHFTNEETHVPNVENPKGSDKVDDASEIESKVDSEVEEAIVVVIQAGVRGLLAQRELLKLKNVIKVQAAVRGFLVRRHAVGTLRCAQAIVKMQAIVRARRARLSPGGSAPDELHKKNEKENPGSKITVKGGKTKSNLRYISIEKLLSNNFARQLLESTPRNNPIKIKCDPSKNDSAWKWLERWMAVSSSDVLEPKEEELVPDQLEKETEELKKEESDTELTKGEIEESHAEDRIDSKALSETEDLNSSTIKSVSPSESEDLMTCDADNLQSQTSCSQSSLVKDNLEQPLPETARTAEAKEISTKVSSVQDQKIQMDDVGLQTESNPLKRLAPEQLENEGKKFVLGLRKVNNPSFINAQEKFEQLSSPSYSTGTIRSMYQDDGIEPHSETVSSTTDTLPRTKESSADENIVLPASRIVQVGVSECGTELSISSTLDSPDISEAGVADPHENDVSKKGVQDPSSDLITEVEVQGSITPMQKGTQLLVDQPEEVSESNGHSITSVAVVDSAPEVSESKLERSSSDQQREKEADTGHDHQTYRSSPEASPRSHLNVPESQGTPSSQVSIKAKRDKTDKSQKQKSPSAGKKSPSSLNCNSGTRSSTDNSYKDQKTGKRRNSFDSARPENVEKELKESISSNSLPHFMQATQSARAKASINSPRSSPDVQDGELYIKKRHSLPADGRQGSPRIQQSTSRTQQGVKGNEKMWRR 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1322142 1327146 + Cp4.1LG11g02380.1 Cpe11g00244 477038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00244 793 SMART iq_5 122 144 IPR000048 GO:0005515
Cpe11g00244 793 SMART iq_5 145 166 IPR000048 GO:0005515
Cpe11g00244 793 MobiDBLite consensus disorder prediction 652 666 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 471 485 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 691 716 - -
Cpe11g00244 793 PANTHER IQ-DOMAIN 5-RELATED 1 788 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 327 346 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 571 793 - -
Cpe11g00244 793 Coils Coil 290 310 - -
Cpe11g00244 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 188 IPR027417 -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 277 326 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 597 623 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 717 748 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 276 346 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 528 542 - -
Cpe11g00244 793 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Cpe11g00244 793 MobiDBLite consensus disorder prediction 516 548 - -
Cpe11g00244 793 Pfam IQ calmodulin-binding motif 126 143 IPR000048 GO:0005515
Cpe11g00244 793 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Cpe11g00244 793 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Cpe11g00244 793 MobiDBLite consensus disorder prediction 667 690 - -
Cpe11g00244 793 PANTHER PROTEIN IQ-DOMAIN 32 1 788 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 469 490 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 195 211 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 571 593 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 189 216 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 751 765 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 768 785 - -
Cpe11g00244 793 MobiDBLite consensus disorder prediction 624 651 - -
Cpe11g00244 793 Gene3D - 122 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00244 - - - csv:101211948 1075.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00375 Cpe11g00244 CCT
Cpe02g00087 Cpe11g00244 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00244 Cpe-Chr11:1322142 Cpe20g00197 Cpe-Chr20:1131548 3.35E-19 dispersed
Cpe11g00244 Cpe-Chr11:1322142 Cpe02g00087 Cpe-Chr2:438656 0 wgd
Cpe11g00244 Cpe-Chr11:1322142 Cpe07g00375 Cpe-Chr7:2417783 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00244 Cpe_Chr11 FPKM 3.940171 5.656394 0.412331 0.186411 0.387774 0.0 0.0 0.152582 0.0 0.294652