Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00250 ATGTCGAACGCCGTCGAAGATCTCATCCTTCGCCACCGCCATCGCCACTCCGATTTCCGATTTCATCTCCTTCAATCTCACTCTCACCATCGCGATATGTCTTCGTCGTCTGCTTCTTCTTCTTCTTCTTCTTCAGCTCCAGCTCTTCCGCCTCTTTGTTTACTTCAGTGTCATCGGCCTTTTCCGCCGTCGGATCAGTCCAACGCTTGCAACTGCCGTCATGCTCCCGGCGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAACATATGGTATCAATGACTCTGAGGCCTTGGCTTGTGGACGAGTTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTTATGCAAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAGTTGAAGTTGCAGAAAAATTCGAAGTCGAGGACTCAAAAATCCGTAGACGAGCCTATTGATGATCCTAATCTTTCTACCAACGGTCGGTACGACAGTTCATTAGGATTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTCGAGGGAATAGGGCTTATAGAGAAAACGACGACAAATCATATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAACTCAACGATCAAGTTGGTAAACTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACATAGACTTGATGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAACCTTTTTATAACGGAAGAAGATATCTTGCGAGTTCCTAGTTTCAAGAATCAAACACTCATAGCAGTACAAGCCCCTCAAGCTAGCTGTATTGAAGTGCCTGATCCGGATGAGGAAGCTTGTTTTTCTGAAAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCAATTGATTTGTACCTCTTAAGGACTGCAAAACAAGGGCTGGAAGAAAATAGTTCCAAGCAAGCGAAACTATCTTCTTCGGTACAGCAGAGGAATCCCAACATACATACCAACAATATTTGTTCTCCTTTCCACGAATTTCATGGAATGCAGAGAATCTTACCTTTATATAATAATATAGACGATGATTATTGGTTCCAATCGAATTCTCAAGTGAGCATTACGCACTTATGGGGTGAGGAACACAACTTTTAA 1254 42.03 MSNAVEDLILRHRHRHSDFRFHLLQSHSHHRDMSSSSASSSSSSSAPALPPLCLLQCHRPFPPSDQSNACNCRHAPGAHSTVATLDLKRTYGINDSEALACGRVVASEQRMRSNDSLCKPVSSANEKQNKKLKLQKNSKSRTQKSVDEPIDDPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGKLKAEVKSLYADEHRLDELIRMKQELLRNLEENANHRKNLFITEEDILRVPSFKNQTLIAVQAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQGLEENSSKQAKLSSSVQQRNPNIHTNNICSPFHEFHGMQRILPLYNNIDDDYWFQSNSQVSITHLWGEEHNF 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1356006 1360481 - Cp4.1LG11g02520.1 Cpe11g00250 477044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00250 417 MobiDBLite consensus disorder prediction 112 128 - -
Cpe11g00250 417 PANTHER TRANSCRIPTION FACTOR E2FC 27 414 - -
Cpe11g00250 417 Pfam E2F/DP family winged-helix DNA-binding domain 162 225 IPR003316 GO:0005667|GO:0006355
Cpe11g00250 417 Coils Coil 252 275 - -
Cpe11g00250 417 PANTHER TRANSCRIPTION FACTOR E2F 27 414 IPR015633 GO:0000978|GO:0006357
Cpe11g00250 417 Pfam E2F transcription factor CC-MB domain 241 340 IPR032198 GO:0046983
Cpe11g00250 417 Gene3D - 155 227 IPR036388 -
Cpe11g00250 417 CDD E2F_DD 236 340 IPR032198 GO:0046983
Cpe11g00250 417 SUPERFAMILY Winged helix DNA-binding domain 160 223 IPR036390 -
Cpe11g00250 417 SMART E2F_TDP_2 160 225 IPR003316 GO:0005667|GO:0006355
Cpe11g00250 417 SUPERFAMILY E2F-DP heterodimerization region 237 340 IPR037241 -
Cpe11g00250 417 Gene3D - 232 342 - -
Cpe11g00250 417 MobiDBLite consensus disorder prediction 112 157 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00370 Cpe11g00250 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00310 Cpe-Chr10:1803394 Cpe11g00250 Cpe-Chr11:1356006 3.11E-72 dispersed
Cpe11g00250 Cpe-Chr11:1356006 Cpe16g00820 Cpe-Chr16:7906566 2.63E-71 dispersed
Cpe11g00250 Cpe-Chr11:1356006 Cpe07g00370 Cpe-Chr7:2375874 2.32E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50217 PF16421 E2F_CC-MB 2.90E-25 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00250 K06620 - csv:101211469 655.595