Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cpe11g00258	ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGAGATCCTTCCTCTGATCTTCAACTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGACAGTCCGGTGCCGGAAATAACTGGGCCAAGGGTCATTACACCGAAGGAGCTGAGTTGATCGACTCCGTTCTTGATGTTGTTCGTAAGGAGGCTGAGAACTGTGATTGCTTGCAAGGTTTTCAGGTTTGTCACTCCCTTGGAGGAGGCACGGGTTCTGGCATGGGAACGCTTTTGATATCGAAGATTAGAGAGGAATATCCAGACAGAATGATGCTCACATTCTCGGTTTTCCCTTCTCCCAAGGTCTCAGACACGGTTGTGGAACCGTATAATGCCACTCTTTCAGTGCATCAGCTGGTAGAGAATGCAGATGAATGCATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGGACCTTGAAGCTCAGCACTCCTAGCTGTGAAGGAATGGATGAAATGGAGTTTACAGAGGCGGAGAGTAATATGAATGACTTGGTTGCTGAGTATCAGCAGTATCAGGACGCCACCGTTGATGATGATGCTGATTTTGAGGATCGTGAAGAAGAATATCCGGAACAGTAA	813	47.6	MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSCEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDDADFEDREEEYPEQ	270

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	1393631	1396727	-	Cp4.1LG11g02730.1	Cpe11g00258	477052

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cpe11g00258	270	PANTHER	TUBULIN BETA-2 CHAIN	224	266	-	-
Cpe11g00258	270	MobiDBLite	consensus disorder prediction	252	270	-	-
Cpe11g00258	270	PANTHER	TUBULIN	224	266	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PANTHER	TUBULIN	1	224	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PANTHER	TUBULIN BETA-1 CHAIN-RELATED	224	265	-	-
Cpe11g00258	270	ProSitePatterns	Tubulin-beta mRNA autoregulation signal.	1	4	IPR013838	-
Cpe11g00258	270	PRINTS	Tubulin signature	134	152	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Tubulin signature	108	132	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Tubulin signature	153	174	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Tubulin signature	53	72	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Tubulin signature	10	30	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Tubulin signature	95	106	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Tubulin signature	192	212	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Tubulin signature	178	191	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	ProSitePatterns	Tubulin subunits alpha, beta, and gamma signature.	142	148	IPR017975	GO:0005525\|GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Beta-tubulin signature	43	60	IPR002453	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Beta-tubulin signature	214	226	IPR002453	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Beta-tubulin signature	90	101	IPR002453	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Beta-tubulin signature	110	128	IPR002453	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017
Cpe11g00258	270	PRINTS	Beta-tubulin signature	154	166	IPR002453	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017
Cpe11g00258	270	SUPERFAMILY	Tubulin nucleotide-binding domain-like	1	230	IPR036525	-
Cpe11g00258	270	PANTHER	TUBULIN	224	265	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	PANTHER	TUBULIN	1	223	IPR000217	GO:0005874\|GO:0007017
Cpe11g00258	270	Coils	Coil	232	252	-	-
Cpe11g00258	270	CDD	beta_tubulin	2	246	-	-
Cpe11g00258	270	Gene3D	Tubulin/FtsZ, GTPase domain	1	254	IPR036525	-
Cpe11g00258	270	MobiDBLite	consensus disorder prediction	250	270	-	-
Cpe11g00258	270	PANTHER	TUBULIN BETA-1 CHAIN-RELATED	1	223	-	-
Cpe11g00258	270	SMART	Tubulin_4	49	251	IPR003008	GO:0005525
Cpe11g00258	270	Pfam	Tubulin/FtsZ family, GTPase domain	3	213	IPR003008	GO:0005525
Cpe11g00258	270	SUPERFAMILY	Tubulin C-terminal domain-like	225	250	IPR008280	-
Cpe11g00258	270	PANTHER	TUBULIN BETA-2 CHAIN	1	224	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cpe11g00258	K07375	TUBB; tubulin beta	-	csv:101204817	456.062

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Cpe03g00077	Cpe-Chr3:418339	Cpe11g00258	Cpe-Chr11:1393631	2.99E-170	dispersed
Cpe10g00931	Cpe-Chr10:5201439	Cpe11g00258	Cpe-Chr11:1393631	2.25E-174	dispersed
Cpe11g00258	Cpe-Chr11:1393631	Cpe18g00202	Cpe-Chr18:3698231	5.32E-162	dispersed
Cpe19g00299	Cpe-Chr19:2627017	Cpe11g00258	Cpe-Chr11:1393631	2.94E-149	dispersed
Cpe20g00150	Cpe-Chr20:852327	Cpe11g00258	Cpe-Chr11:1393631	7.65E-149	dispersed
Cpe11g00258	Cpe-Chr11:1393631	Cpe07g00363	Cpe-Chr7:2343891	1.31E-19	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi18g1118	Blo01g01599	.	.	.	.	.	.	Bma01g02369	Cmo05g00312	Cmo12g00357	.	.	.	Car12g00384	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Bda08g01218	.	.	.	Bma01g00727	.	.	.	.	.	Cma05g00309	Car05g00257	.	Cpe11g00258	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Csa02g02138	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0012642	0	0	2	0	0	0	9	0	0	0	0	0	0	0	0	0	1	0	9	0	0	0	1	0	3	1	0	0	0	3	29

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cpe11g00258	Cpe_Chr11	FPKM	1.305296	2.364744	2.010531	2.512351	3.812849	2.721011	4.04902	2.39269	1.124573	1.642129