Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00260 ATGGCGGCCTCTGTTCATCATTTCCTATTGGCTTTCTTAAATCTTCTGCTGTTGGTACCAGGTGGGTTTTCGAGGAGCTTTACGTTTGTGAACAAATGTGAGTTCACGGTCTGGCCGGGGATTCTGTCGAACGGCGGCGTTCCGCCTCTTCCCACCACTGGATTCTCTCTCCGGACTGGGGAATCCAAGACGCTGCCGGCTCCGGCGTCTTGGGGAGGGCGTTTCTGGGGGAGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGCGGCACCGGCGACTGTGGTTCTAACAAACTCGAGTGCGCCGGAAATGGAGCGACGCCGCCAGCGACTCTGGCGGAGTTTACTCTCGACGGCTCCGGCGGACTTGATTTCTTCGACGTTAGTCTTGTGGATGGTTATAATCTTCCGATGATAGTGGTACCACAGGGCGGCTCCGGCGATAACTGTACAAGCACAGGCTGCGTGGTGGATCTAAATGGCGCGTGCCCAACAGAGCTTCGTGTAACGAGTGCCGACGGAAGGGAGGGTGTCGCGTGTAAAAGCGCGTGTGATGCGTTTAGCAAACCGCAGTATTGTTGCACGGGCGCGTACCAAACACCAGACACTTGCCAGCCGTCGATGTATTCTCAGATCTTCAAGAGTGCGTGCCCACGCGCTTACAGCTACGCGTATGACGACAAGACGAGCACCTTCACATGCGCCAGTGCTGATTACGTCATCACATTCTGTCCATCCCCAAACACAAGCTACCACAAGGCCATACTAGAGGGGTATAATTGGAAATTAGGTTGGTGGAGAAGGGCATTTTTGTCCATTTGTATTGATCAACCGCCATTGTTGGTGGCCGACATAGACCCGGAGGTGACCAGTATAGGCACGCACTTTCATATAGCCATAGTCAAAAGCCAAAAGTCATCGGAGGCGCAGAACTCACCGGCGACGGCGAACCCATCCTCCGGCGGTGATGGTGCGATGGTTTACGAAGGCGCATCTCTGATACAAATCAACTCCGCGCCGTCGCATGTAACCGGGATTTCAGCGGTCGGTGCGGTGGCGATTTGGTGGTTGTTGCAGCAGCTGTTCCTCTACTTCTGA 1104 54.53 MAASVHHFLLAFLNLLLLVPGGFSRSFTFVNKCEFTVWPGILSNGGVPPLPTTGFSLRTGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCGTGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPTELRVTSADGREGVACKSACDAFSKPQYCCTGAYQTPDTCQPSMYSQIFKSACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSYHKAILEGYNWKLGWWRRAFLSICIDQPPLLVADIDPEVTSIGTHFHIAIVKSQKSSEAQNSPATANPSSGGDGAMVYEGASLIQINSAPSHVTGISAVGAVAIWWLLQQLFLYF 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1408672 1411321 + Cp4.1LG11g02650.1 Cpe11g00260 477054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00260 367 Gene3D Thaumatin 26 247 IPR037176 -
Cpe11g00260 367 CDD TLP-PA 26 246 - -
Cpe11g00260 367 PANTHER OS03G0233200 PROTEIN 17 274 IPR001938 -
Cpe11g00260 367 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cpe11g00260 367 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cpe11g00260 367 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cpe11g00260 367 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cpe11g00260 367 SMART tha2 27 247 IPR001938 -
Cpe11g00260 367 Pfam Thaumatin family 31 247 IPR001938 -
Cpe11g00260 367 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cpe11g00260 367 PANTHER BNAA02G17480D PROTEIN 17 274 - -
Cpe11g00260 367 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00360 Cpe11g00260 CCT
Cpe07g00360 Cpe11g00260 ECH
Cpe02g00066 Cpe11g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00260 Cpe-Chr11:1408672 Cpe14g01026 Cpe-Chr14:8632746 2.41E-102 dispersed
Cpe11g00260 Cpe-Chr11:1408672 Cpe11g00261 Cpe-Chr11:1415211 2.30E-92 tandem
Cpe10g00668 Cpe-Chr10:3853700 Cpe11g00260 Cpe-Chr11:1408672 4.55E-103 wgd
Cpe11g00260 Cpe-Chr11:1408672 Cpe16g00306 Cpe-Chr16:4963336 1.78E-114 wgd
Cpe11g00260 Cpe-Chr11:1408672 Cpe19g00864 Cpe-Chr19:6375834 1.23E-93 wgd
Cpe11g00260 Cpe-Chr11:1408672 Cpe02g00066 Cpe-Chr2:340568 1.21E-137 wgd
Cpe11g00260 Cpe-Chr11:1408672 Cpe06g00061 Cpe-Chr6:313847 2.42E-142 wgd
Cpe11g00260 Cpe-Chr11:1408672 Cpe07g00360 Cpe-Chr7:2326165 1.35E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00260 - - csv:101204094 558.91