Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00261 ATGGGATTTCTTCGAACCCATTTTCTCTCTCCTCCATTTTTGTTTCTCTCTCTGCTTTTGATCGTCTTCTTTAACGGCGTTTATGGAGCTGGAATTACATTAATAAATAGATGCGATTACACAGTTTGGCCGGGAATTCTCGGAAACACCCAATTGGAATCCACTGGCTTCGAGCTCTCCCCTGGGGCGGCGCGTGCATTCCAACCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGCCGGACAGGCTGTTCGTTCGACTCCGCCACCGGTCAAGGCAGCTGCCAGACAGCCGACTGTGGGTCAAACCAAATGGAATGCAATGGCAACGGAGCCACCCCACCCGCGACTCTAGCTGAGTTCACGATTGGTTCCGGTGGTGGCGCGATGGACTTTTACGATGTCAGTTTGGTCGACGGCTACAACATTCCGATGATGGTCGACTCCACTGGCGGGAGCGGCACTTGTCAGTCGACTGGATGTGCGGCGGACCTGAACCGACGGTGCCCTGCGGAACTACGTGGTGGCGAGGGGAAAGCGTGTAGAAGCGCATGTGAGGCGTTTGGGAATCCGGAGTACTGTTGTAGTGGCGCGTATAACTCACCCGCCGCCTGTAAACCGTCGTTGTACTCGGAAATGTTTAAATCGGCTTGCCCCAAATCGTATAGCTACGCCTTTGATGACGCGTCAAGCACTTTTACTTGCAGTGGTGCAGATTACACCATCACATTCTGCCCTTCATCAGCAAGCCAAAAATCAGAAAAAGACCCGTCGAACCGAGGCGATGGGCCGTCGGTGACGTTCAACAGTTCATGGCTGCCGGACTTCATCACCGGAGACGGATCATCCAAAACAATGGCTTTGTCTTCAGCTTTGAATTGGTCACTGTTTCTTTTTATTTTTTTTATTTTCTTCTTCCATTAG 921 52.33 MGFLRTHFLSPPFLFLSLLLIVFFNGVYGAGITLINRCDYTVWPGILGNTQLESTGFELSPGAARAFQPPPGWSGRFWGRTGCSFDSATGQGSCQTADCGSNQMECNGNGATPPATLAEFTIGSGGGAMDFYDVSLVDGYNIPMMVDSTGGSGTCQSTGCAADLNRRCPAELRGGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSLYSEMFKSACPKSYSYAFDDASSTFTCSGADYTITFCPSSASQKSEKDPSNRGDGPSVTFNSSWLPDFITGDGSSKTMALSSALNWSLFLFIFFIFFFH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1415211 1416953 + Cp4.1LG11g02660.1 Cpe11g00261 477055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00261 306 Gene3D Thaumatin 30 245 IPR037176 -
Cpe11g00261 306 Pfam Thaumatin family 36 245 IPR001938 -
Cpe11g00261 306 PANTHER OS03G0233200 PROTEIN 20 262 IPR001938 -
Cpe11g00261 306 SMART tha2 32 245 IPR001938 -
Cpe11g00261 306 ProSiteProfiles Thaumatin family profile. 29 245 IPR001938 -
Cpe11g00261 306 CDD TLP-PA 32 244 - -
Cpe11g00261 306 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 20 262 - -
Cpe11g00261 306 SUPERFAMILY Osmotin, thaumatin-like protein 32 246 IPR037176 -
Cpe11g00261 306 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Cpe11g00261 306 PRINTS Pathogenesis-related protein signature 55 64 IPR001938 -
Cpe11g00261 306 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Cpe11g00261 306 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Cpe11g00261 306 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00061 Cpe11g00261 CCT
Cpe06g00061 Cpe11g00261 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00360 Cpe-Chr7:2326165 Cpe11g00261 Cpe-Chr11:1415211 3.10E-90 dispersed
Cpe11g00261 Cpe-Chr11:1415211 Cpe19g00864 Cpe-Chr19:6375834 1.41E-78 dispersed
Cpe11g00260 Cpe-Chr11:1408672 Cpe11g00261 Cpe-Chr11:1415211 2.30E-92 tandem
Cpe11g00261 Cpe-Chr11:1415211 Cpe16g00307 Cpe-Chr16:4967629 6.98E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00261 - - csv:101204331 518.85