Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00262 ATGAGGAAGTGGACGATCGCTTCTGCTCTTCTCCTTCTTTGCTTTCTCTCCCTCGTACCTGATGAAGGTTCTAGATTTCATGCCAAGGCCGACGGTGATGCCGACGAGGTTGTAGATCCACCAAAGGTCGAGGAAAAGATCGGCGCCGTTCCGCATGGACTCTCCACGGATTCTGATGTTGTCAAGAGGGAGTCGGAGTCCATCTCGAAGAGATCTCTTCGAGGCAGCGCGGAGAAATTTGAGTTCCAAGCTGAGGTGTCTCGTCTCATGGACATTATTATCAATTCCTTGTATAGTAACAAAGACATTTTCCTCAGAGAATTGATCTCCAACGCTTCTGATGCGTTGGATAAGATTAGGTTCCTTTCCCTGACCGATAAAGAGATCTTGGGTGAAGGCGACAACTCGAAGCTGGAGATTCAAATTAAGTTGGACAAAGCAAACAAAGTCCTTTCGATTCGCGACAGAGGTATTGGTATGACGAAAGAGGATTTGATTAAGAACTTGGGAACCATAGCGAAATCTGGAACTTCAGCATTTGTGGAAAAAATGCAGACAAGCGGTGATCTCAATCTTATTGGACAATTTGGAGTAGGTTTCTACTCCGTGTATCTTGTGGCTGATTACGTTGAAGTGATCAGTAAACACAACGATGACAAACAACATGTGTGGGAGTCCAAGGCTGATGGAGCATTCGCCATCTCTGAAGATACTTGGAATGAACCCTTAGGCCGCGGAACTGAAATTAGATTGCATCTTAGAGATGAAGCTCAAGAATACCTGGAGGAGGGCAAACTGAAAGATTTGGTGAAGAGATATTCAGAATTTATCAACTTCCCCATTTATATCTGGGGAAGCAAAGAGATCGACGTGGACGTTCCTGCAGATGAGGATGAATCCAATGATGAAGAAGCACCGCCCGAAAGCTCAGAAGAGGAAGATGATGCAGAAAAGAGTGAAGATGATGATGCTGAGAAGTCAAAGACAAAGAAAGTCAAAGAAACAATTTATGAATGGGAGCTTTTGAATGATGTGAAAGCCATATGGCTGCGGAGTCCCAAAGAAGTGACAGAGGAAGAGTATACTAAATTCTACCACTCTCTTGCTAAGGATTTTAGTGATGACAAGCCTATGTCATGGAGTCACTTCAATGCAGAAGGTGATGTTGAGTTCAAAGCTGTTCTGTTTGTGCCTCCTAAGGCTCCTCATGATCTCTACGAGAGCTACTATAACAGCAAAAAATCCAACTTGAAGCTGTATGTTCGAAGGGTTTTCATCTCAGACGAGTTTGATGAGCTCCTGCCGAAGTATTTGAACTTTTTGCTGAGTAGTGATGATGATGAGAAGAAAGGCCAGTACAGTCGATTCTGGAATGAGTTTGGCAAATCAATTAAACTTGGTATTATTGAGGACGCGACTAACAGAAACCGTCTAGCAAAACTGCTCCGATTCGAGAGTTTCGCTTCTGGGTTGCTTTATTCTGCCTCATTGATGCTTCTCTGTCTCCCTGAGATCATAACCTTAAACGAACTCTCTTGCAGCTCCAAGTCGGATGGCAAATTGATTTCACTGGATCAGTATATTTCAAGAATGAAATCAGGACAAAAGGATATCTTTTACATTACTGGCTCAAGCAAGGAACAGTTGGAGAAATCCCCATTCCTTGAGCGTCTTAAGAAGAAGAACTATGAGGTTATCTTTTTCACGGATCCGGTTGATGAGTACTTGATGCAATATCTCATGGACTACGAAGACAAAAAATTCCAAAATGTATCTAAGGAGGGTCTCAAACTAGGCAAAGACTCGAAGGATAAAGAACTCAAGGAGTCCTTCAAGGATCTTACTAAATGGTGGAAGACCGCCCTTTCTTTCGACAACGTTGACGATGTCAAAGTTTCGAATCGTTTGGATAACACACCTTGTGTGGTTGTGACATCCAAGTATGGATGGAGCGCTAATATGGAAAGGATCATGCAGTCTCAGACCCTATCAGATGCTAGCAAACAAGCATATATGCGCGGTAAGAGGGTGCTCGAGATCAACCCAAGGCACCCGATCATCAAGGATCTTCGGGAGAGAATAGTCAAGGATTCGGAGGACGAGGGCGCAAAGCATGCTGCAAAACTGATGTACCAGACAGCTCTTCTGGAAAGCGGGTTTATTCTCAGTGATCCCAAGGATTTTGCCTCCCAAATCTATGACACGGTGAAGACTAGCTTAAACATAAGTTCCGACGCAACTGTTGAAGAGGAAGATGAAGCAGAAGTCGTCGAGACTGGATCGAAGGCTGCGGAAGCTGAAGATACTATCAAATCGGAAACAGCCGATGAGGACGTAAAGGATGAGCTGTAG 2352 44.01 MRKWTIASALLLLCFLSLVPDEGSRFHAKADGDADEVVDPPKVEEKIGAVPHGLSTDSDVVKRESESISKRSLRGSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNSKLEIQIKLDKANKVLSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAQEYLEEGKLKDLVKRYSEFINFPIYIWGSKEIDVDVPADEDESNDEEAPPESSEEEDDAEKSEDDDAEKSKTKKVKETIYEWELLNDVKAIWLRSPKEVTEEEYTKFYHSLAKDFSDDKPMSWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNSKKSNLKLYVRRVFISDEFDELLPKYLNFLLSSDDDEKKGQYSRFWNEFGKSIKLGIIEDATNRNRLAKLLRFESFASGLLYSASLMLLCLPEIITLNELSCSSKSDGKLISLDQYISRMKSGQKDIFYITGSSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKELKESFKDLTKWWKTALSFDNVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKDLRERIVKDSEDEGAKHAAKLMYQTALLESGFILSDPKDFASQIYDTVKTSLNISSDATVEEEDEAEVVETGSKAAEAEDTIKSETADEDVKDEL 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1418617 1424719 + Cp4.1LG11g02600.1 Cpe11g00262 477056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00262 783 SUPERFAMILY Ribosomal protein S5 domain 2-like 345 594 IPR020568 -
Cpe11g00262 783 PANTHER BNAA08G14800D PROTEIN 444 489 - -
Cpe11g00262 783 Pfam Hsp90 protein 514 766 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 Pfam Hsp90 protein 447 489 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 Pfam Hsp90 protein 259 441 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 Gene3D - 598 740 IPR037196 -
Cpe11g00262 783 Hamap Chaperone protein HtpG [htpG]. 75 737 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 MobiDBLite consensus disorder prediction 744 783 - -
Cpe11g00262 783 Gene3D - 444 483 - -
Cpe11g00262 783 Gene3D - 344 443 - -
Cpe11g00262 783 SUPERFAMILY HSP90 C-terminal domain 613 735 IPR037196 -
Cpe11g00262 783 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 444 489 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 515 767 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 20 441 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cpe11g00262 783 MobiDBLite consensus disorder prediction 294 320 - -
Cpe11g00262 783 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Cpe11g00262 783 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Cpe11g00262 783 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Cpe11g00262 783 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Cpe11g00262 783 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Cpe11g00262 783 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Cpe11g00262 783 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Cpe11g00262 783 MobiDBLite consensus disorder prediction 294 329 - -
Cpe11g00262 783 Gene3D - 65 298 IPR036890 -
Cpe11g00262 783 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Cpe11g00262 783 PIRSF HSP90_HTPG 54 446 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 PIRSF HSP90_HTPG 441 781 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe11g00262 783 MobiDBLite consensus disorder prediction 757 777 - -
Cpe11g00262 783 PANTHER BNAA08G14800D PROTEIN 515 767 - -
Cpe11g00262 783 PANTHER BNAA08G14800D PROTEIN 20 441 - -
Cpe11g00262 783 CDD HATPase_Hsp90-like 87 277 - -
Cpe11g00262 783 Gene3D - 511 597 - -
Cpe11g00262 783 SMART HKATPase_4 100 257 IPR003594 -
Cpe11g00262 783 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00262 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - csv:101203607 1308.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00357 Cpe11g00262 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00359 Cpe-Chr7:2311375 Cpe11g00262 Cpe-Chr11:1418617 1.51E-27 dispersed
Cpe11g00262 Cpe-Chr11:1418617 Cpe13g00465 Cpe-Chr13:4887606 8.42E-164 dispersed
Cpe11g00262 Cpe-Chr11:1418617 Cpe07g00357 Cpe-Chr7:2304753 6.33E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00262 Cpe_Chr11 FPKM 14.886325 14.891194 18.071112 16.074495 13.398061 16.133675 14.591895 18.584803 18.424931 19.053619