Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00269 ATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCGCCTAACTATGCTCTGCCCAACAACAATGGCGACATTGCAGACGCTATAAATCTTTTGGATAAGCTCGTTGATTTGAAGTTTAATGGGGTTTTGAGCAGAGCTATGGGTTTTCATGGACCCAAGAGAGTCTTCCCCTTGATCATGTCAGCCACTGTCTGA 492 52.44 MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGDIADAINLLDKLVDLKFNGVLSRAMGFHGPKRVFPLIMSATV 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1454386 1457360 + Cp4.1LG11g02670.1 Cpe11g00269 477063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00269 163 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cpe11g00269 163 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Cpe11g00269 163 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cpe11g00269 163 PANTHER EXPANSIN 10 123 - -
Cpe11g00269 163 PANTHER EXPANSIN-A15 10 123 IPR002963 GO:0009664
Cpe11g00269 163 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Cpe11g00269 163 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Cpe11g00269 163 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Cpe11g00269 163 SMART dpbb_1 65 159 IPR007112 -
Cpe11g00269 163 SUPERFAMILY Barwin-like endoglucanases 18 120 IPR036908 -
Cpe11g00269 163 Pfam Lytic transglycolase 65 116 IPR009009 -
Cpe11g00269 163 Gene3D - 20 141 IPR036908 -
Cpe11g00269 163 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00269 Cpe-Chr11:1454386 Cpe01g01474 Cpe-Chr1:8805796 1.06E-43 dispersed
Cpe07g00350 Cpe-Chr7:2266900 Cpe11g00269 Cpe-Chr11:1454386 1.17E-65 transposed
Cpe11g00269 Cpe-Chr11:1454386 Cpe07g00347 Cpe-Chr7:2248621 1.10E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00269 - - csv:101216569 228.794