Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00283 ATGGCTTCGAAGCTTTGTGATTCGTGTAAGTCCGCCACCGCCACTCTCTTCTGCCGAGCCGACTCTGCCTTCCTTTGCCTTGGCTGTGATTCCGAAGTTCACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGCAAGGCGGATGCCGCTGCTCTCTGCCTCGCTTGTGACCACGATATTCATTCTGCTAATCCCCTCGCACGCCGTCACGAGCGAGTTCCTGTCACGCCGTTCTACGATACCTCCAACTCTGAGAACTCCCTCGCCGTCAAGCCTGGCGCTGCAATCAACTTCCTCGATGACCGCTACTTCTCCGATGTCGACGCCGATGCCGCTGATGTCAGTAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTCCAGATTTAAACTCGGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTGGAAGCGCAAGAGCAAAATAGCTCTGGTGCCGATGGAGTTGTTCCTGATCAGACCAAAGGCGTCCATCTCTCATCAGTTAACGATCGCTGCTTCAACATAGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTTCAATCCACAGTCAATCAGTCACAGCGTATCATCTTCGTCAGTCGAGGTTGGAGTCGTGCCAGACGGTAACGCAATGACGGATGTATCAAATCCGTACACAAAACCGTCAACGGAATCGTCGATTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCGTACGCCGAGACGCGACCTCGAATCAAAGGACGGTTCGCCAAAAGGACGGACATCGAACTCGAGGTTGACCGAGTGAGTGGATACGGCGTCGTTCCGTCATTCTAA 1014 53.25 MASKLCDSCKSATATLFCRADSAFLCLGCDSEVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSNSENSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPDQTKGVHLSSVNDRCFNIDFPGAKSFPYGFNPQSISHSVSSSSVEVGVVPDGNAMTDVSNPYTKPSTESSIQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1535861 1537575 + Cp4.1LG11g02780.1 Cpe11g00283 477077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00283 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Cpe11g00283 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
Cpe11g00283 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cpe11g00283 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cpe11g00283 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Cpe11g00283 337 CDD Bbox1_BBX-like 5 48 - -
Cpe11g00283 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cpe11g00283 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Cpe11g00283 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cpe11g00283 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cpe11g00283 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00283 - - - csv:101208063 617.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00334 Cpe11g00283 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00283 Cpe-Chr11:1535861 Cpe18g00605 Cpe-Chr18:6389288 6.38E-105 dispersed
Cpe16g00456 Cpe-Chr16:5788200 Cpe11g00283 Cpe-Chr11:1535861 1.20E-09 dispersed
Cpe11g00283 Cpe-Chr11:1535861 Cpe07g00334 Cpe-Chr7:2164576 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00334 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 8.4e-45 178.3
Cpe07g00334 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 7.7e-43 171.8
Cpe11g00283 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Cpe07g00334 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 58.9 6.5e-77 285.0
Cpe04g01287 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 6.7e-58 221.9
Cpe18g00605 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.4 4.8e-56 215.7
Cpe04g01287 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.8e-64 243.0
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 5.8e-89 325.1
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-87 319.3
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.4 2.7e-86 316.2
Cpe16g00362 CST 25 293 C2C2-CO-like Transcription Factor Family AT3G07650 50.5 6.7e-53 205.3
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe04g00107 CCT,CST,ECH 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 2.7e-53 206.5
Cpe15g00559 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.2e-48 191.0
Cpe01g00595 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 55.2 5.0e-57 218.8
Cpe01g00702 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 1.5e-55 213.0
Cpe14g00516 . 1 193 C2C2-CO-like Transcription Factor Family AT2G21320 58.5 1.1e-53 206.8
Cpe19g00845 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.6e-49 191.4
Cpe10g00649 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Cpe01g00702 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Cpe14g00516 . 1 192 C2C2-CO-like Transcription Factor Family AT4G38960 61.5 2.7e-55 212.2
Cpe19g00845 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.5e-50 196.4
Cpe10g00649 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Cpe04g00107 CCT,CST,ECH 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 1.4e-54 210.3
Cpe15g00559 CCT,CST,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 5.9e-50 194.9
Cpe07g00385 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.0 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50218 PF00643 zf-B_box 5.30E-06 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00283 Cpe_Chr11 FPKM 0.980292 1.758931 2.084766 1.326625 2.030743 2.018509 1.905755 2.029837 1.772924 2.391219