Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00283 ATGGCTTCGAAGCTTTGTGATTCGTGTAAGTCCGCCACCGCCACTCTCTTCTGCCGAGCCGACTCTGCCTTCCTTTGCCTTGGCTGTGATTCCGAAGTTCACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGCAAGGCGGATGCCGCTGCTCTCTGCCTCGCTTGTGACCACGATATTCATTCTGCTAATCCCCTCGCACGCCGTCACGAGCGAGTTCCTGTCACGCCGTTCTACGATACCTCCAACTCTGAGAACTCCCTCGCCGTCAAGCCTGGCGCTGCAATCAACTTCCTCGATGACCGCTACTTCTCCGATGTCGACGCCGATGCCGCTGATGTCAGTAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTCCAGATTTAAACTCGGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTGGAAGCGCAAGAGCAAAATAGCTCTGGTGCCGATGGAGTTGTTCCTGATCAGACCAAAGGCGTCCATCTCTCATCAGTTAACGATCGCTGCTTCAACATAGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTTCAATCCACAGTCAATCAGTCACAGCGTATCATCTTCGTCAGTCGAGGTTGGAGTCGTGCCAGACGGTAACGCAATGACGGATGTATCAAATCCGTACACAAAACCGTCAACGGAATCGTCGATTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCGTACGCCGAGACGCGACCTCGAATCAAAGGACGGTTCGCCAAAAGGACGGACATCGAACTCGAGGTTGACCGAGTGAGTGGATACGGCGTCGTTCCGTCATTCTAA 1014 53.25 MASKLCDSCKSATATLFCRADSAFLCLGCDSEVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSNSENSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPDQTKGVHLSSVNDRCFNIDFPGAKSFPYGFNPQSISHSVSSSSVEVGVVPDGNAMTDVSNPYTKPSTESSIQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1535861 1537575 + Cp4.1LG11g02780.1 Cpe11g00283 477077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00283 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Cpe11g00283 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
Cpe11g00283 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cpe11g00283 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cpe11g00283 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Cpe11g00283 337 CDD Bbox1_BBX-like 5 48 - -
Cpe11g00283 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cpe11g00283 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Cpe11g00283 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cpe11g00283 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cpe11g00283 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00334 Cpe11g00283 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00283 Cpe-Chr11:1535861 Cpe18g00605 Cpe-Chr18:6389288 6.38E-105 dispersed
Cpe16g00456 Cpe-Chr16:5788200 Cpe11g00283 Cpe-Chr11:1535861 1.20E-09 dispersed
Cpe11g00283 Cpe-Chr11:1535861 Cpe07g00334 Cpe-Chr7:2164576 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50218 PF00643 zf-B_box 5.30E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00283 - - csv:101208063 617.461