Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00283 | ATGGCTTCGAAGCTTTGTGATTCGTGTAAGTCCGCCACCGCCACTCTCTTCTGCCGAGCCGACTCTGCCTTCCTTTGCCTTGGCTGTGATTCCGAAGTTCACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGCAAGGCGGATGCCGCTGCTCTCTGCCTCGCTTGTGACCACGATATTCATTCTGCTAATCCCCTCGCACGCCGTCACGAGCGAGTTCCTGTCACGCCGTTCTACGATACCTCCAACTCTGAGAACTCCCTCGCCGTCAAGCCTGGCGCTGCAATCAACTTCCTCGATGACCGCTACTTCTCCGATGTCGACGCCGATGCCGCTGATGTCAGTAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTCCAGATTTAAACTCGGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTGGAAGCGCAAGAGCAAAATAGCTCTGGTGCCGATGGAGTTGTTCCTGATCAGACCAAAGGCGTCCATCTCTCATCAGTTAACGATCGCTGCTTCAACATAGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTTCAATCCACAGTCAATCAGTCACAGCGTATCATCTTCGTCAGTCGAGGTTGGAGTCGTGCCAGACGGTAACGCAATGACGGATGTATCAAATCCGTACACAAAACCGTCAACGGAATCGTCGATTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCGTACGCCGAGACGCGACCTCGAATCAAAGGACGGTTCGCCAAAAGGACGGACATCGAACTCGAGGTTGACCGAGTGAGTGGATACGGCGTCGTTCCGTCATTCTAA | 1014 | 53.25 | MASKLCDSCKSATATLFCRADSAFLCLGCDSEVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSNSENSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPDQTKGVHLSSVNDRCFNIDFPGAKSFPYGFNPQSISHSVSSSSVEVGVVPDGNAMTDVSNPYTKPSTESSIQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1535861 | 1537575 | + | Cp4.1LG11g02780.1 | Cpe11g00283 | 477077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00283 | 337 | ProSiteProfiles | CCT domain profile. | 276 | 318 | IPR010402 | GO:0005515 | |
Cpe11g00283 | 337 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 5 | 2 | 337 | - | - | |
Cpe11g00283 | 337 | SMART | bboxneu5 | 1 | 48 | IPR000315 | GO:0008270 | |
Cpe11g00283 | 337 | SMART | bboxneu5 | 49 | 91 | IPR000315 | GO:0008270 | |
Cpe11g00283 | 337 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 2 | 337 | IPR045281 | GO:0009909 | |
Cpe11g00283 | 337 | CDD | Bbox1_BBX-like | 5 | 48 | - | - | |
Cpe11g00283 | 337 | ProSiteProfiles | Zinc finger B-box type profile. | 44 | 91 | IPR000315 | GO:0008270 | |
Cpe11g00283 | 337 | Pfam | CCT motif | 276 | 318 | IPR010402 | GO:0005515 | |
Cpe11g00283 | 337 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 48 | IPR000315 | GO:0008270 | |
Cpe11g00283 | 337 | Pfam | B-box zinc finger | 4 | 43 | IPR000315 | GO:0008270 | |
Cpe11g00283 | 337 | Pfam | B-box zinc finger | 46 | 91 | IPR000315 | GO:0008270 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g00334 | Cpe11g00283 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00283 | Cpe-Chr11:1535861 | Cpe18g00605 | Cpe-Chr18:6389288 | 6.38E-105 | dispersed | |
Cpe16g00456 | Cpe-Chr16:5788200 | Cpe11g00283 | Cpe-Chr11:1535861 | 1.20E-09 | dispersed | |
Cpe11g00283 | Cpe-Chr11:1535861 | Cpe07g00334 | Cpe-Chr7:2164576 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50218 | PF00643 | zf-B_box | 5.30E-06 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00283 | - | - | csv:101208063 | 617.461 |