Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00286 ATGAGGTCATTGTACTCGGTAGTCGGGACATCGTTTCGAGCTTTGTCCAATCTTTTGTTAACCCATTCTCTAGCCATCAAATTGGGTACCATAGCAGACGTTTACACTTGCAACAATATCCTAAATGGGTATTGGAAATGCAAAGAGTTCCGATCTGCAGACGTACTGTTCGACGAAATGCCGCTGAGAGACTCTGTATCTTGGAATACGATGATCGGGGGTTATATTAACTCTGGAAACTTGGAGAATTCATGGGAAGTTCTTAAATGCATGAGAAGATGTGGTTTGGATCAAGATGAGTACACGTTTGGAAGCATGCTGAAGGGCATTGCTTGTGCTGGTATGCTTGATTTGGGTCAGCAAATACATTCTATGATCATTAAGATGGGTTTTGCTGGAAATGTATATGCAGGGAGTGCTCTTCTGGATATGTATGCGAAATGTGAGAGACTTGAGGATGCATATTTGACATTCCTAAATATATCTAAACAGAACACTGTTTCGTGGAATGCAATGATTGCTGGATATGCGCAAATGGGCGATCGTGAGACTGCGTTTTCGTTGTTAGATTGTATGGAGCAAGAAGGTGAGAAGGTTAATGATGGCTCATTTGCTCCTCTTTTGCCTTTACTAGATGATGCTGAGTTTTGTAGATTAACAAGGCAAGTTCATGGAAAAGTCATAAAACATGGATTGGAATCTGCTAATACAATGTGTAATGCTTTGATCACTTCTTATTCAGAATGTGGATCCCTTGTTGATGCCAAAAGGGTTTTCAATTGTTCGGCTGGCGTTCGAGATTTGGTGTCGTGGAACTCCCTGTTGGGTGCTTTTTTGGTGCATAATCAGGAAGATCTTGCTTTTAAACTCTTCATTGATATGCAAGAACATGGTTTTGAACCAGATTTGTACTCTTACACAAGCATTATCAGTGCTTGTTTCAACAAAGAGCTTAGCAATAATGGGAAATCCCTGCATGGGATGGTCATTAAAAGAGGATTAGAAGAATCGGTGCCAATTTCAAATGCATTGATATCTATGTATCTTAAATCAGACAGTGGTTCAATGAAGGAAGCTTTATGTATATTTGAATCCTTGGAGATTAAGGATCGTGTGTCGTGGAACTCGATCTTGACGGGATTATCACAAATGGGGTCGAGCGAAGATGCCGTGAAGTCGTTTCTGCATATGAGATCTTTAGCAATGGATATTGATCAGTATTCGTTTTCTGCTGTGCTCAAATCATGCTCAGATTTGGCTACCTTTCAATTGGGACAACAATTTCATGTCTTGGCTCTTAAATATGGTATGGATTCCAATGAGTTTGTTTCAAGTTCATTAATCTTCATGTATTCGAAGTGTGGGATTATGGAAGATGCTAAAAGATCATTTGAAGGAGCTTCAAAAAGCTCTTCAATCACTTGGAATGCACTCATGTTTGGCTATGCACAACATGGGCAATGCCATCTCAACAACCCCATTCCAGACACAGCCCGCCGACGGAAAATCGCCGTCGTGGCTGTAGCCGTCGCCGTCCCCACTGTGTTCAGTTGCTTGGTGAACAGTTCATTTGTAATCATAGAAGTGACTAGCAATTAA 1599 40.9 MRSLYSVVGTSFRALSNLLLTHSLAIKLGTIADVYTCNNILNGYWKCKEFRSADVLFDEMPLRDSVSWNTMIGGYINSGNLENSWEVLKCMRRCGLDQDEYTFGSMLKGIACAGMLDLGQQIHSMIIKMGFAGNVYAGSALLDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQMGDRETAFSLLDCMEQEGEKVNDGSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNALITSYSECGSLVDAKRVFNCSAGVRDLVSWNSLLGAFLVHNQEDLAFKLFIDMQEHGFEPDLYSYTSIISACFNKELSNNGKSLHGMVIKRGLEESVPISNALISMYLKSDSGSMKEALCIFESLEIKDRVSWNSILTGLSQMGSSEDAVKSFLHMRSLAMDIDQYSFSAVLKSCSDLATFQLGQQFHVLALKYGMDSNEFVSSSLIFMYSKCGIMEDAKRSFEGASKSSSITWNALMFGYAQHGQCHLNNPIPDTARRRKIAVVAVAVAVPTVFSCLVNSSFVIIEVTSN 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1550190 1553772 - Cp4.1LG11g02900.1 Cpe11g00286 477080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00286 532 PANTHER BNAA02G27730D PROTEIN 22 90 - -
Cpe11g00286 532 Gene3D Tetratricopeptide repeat domain 326 425 IPR011990 GO:0005515
Cpe11g00286 532 Gene3D Tetratricopeptide repeat domain 426 499 IPR011990 GO:0005515
Cpe11g00286 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Cpe11g00286 532 PANTHER OS01G0913400 PROTEIN-RELATED 22 90 - -
Cpe11g00286 532 Pfam PPR repeat family 267 314 IPR002885 -
Cpe11g00286 532 Pfam PPR repeat family 64 110 IPR002885 -
Cpe11g00286 532 Gene3D Tetratricopeptide repeat domain 129 261 IPR011990 GO:0005515
Cpe11g00286 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cpe11g00286 532 PANTHER BNAA02G27730D PROTEIN 89 508 - -
Cpe11g00286 532 Gene3D Tetratricopeptide repeat domain 262 325 IPR011990 GO:0005515
Cpe11g00286 532 Pfam PPR repeat 167 196 IPR002885 -
Cpe11g00286 532 Pfam PPR repeat 238 260 IPR002885 -
Cpe11g00286 532 Pfam PPR repeat 35 61 IPR002885 -
Cpe11g00286 532 Pfam PPR repeat 372 399 IPR002885 -
Cpe11g00286 532 Pfam PPR repeat 473 488 IPR002885 -
Cpe11g00286 532 Gene3D Tetratricopeptide repeat domain 10 128 IPR011990 GO:0005515
Cpe11g00286 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Cpe11g00286 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Cpe11g00286 532 PANTHER OS01G0913400 PROTEIN-RELATED 89 508 - -
Cpe11g00286 532 TIGRFAM PPR: pentatricopeptide repeat domain 167 200 IPR002885 -
Cpe11g00286 532 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Cpe11g00286 532 TIGRFAM PPR: pentatricopeptide repeat domain 66 96 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00286 - - - cmax:111492460 959.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00286 Cpe-Chr11:1550190 Cpe03g00167 Cpe-Chr3:835756 6.00E-55 dispersed
Cpe11g00286 Cpe-Chr11:1550190 Cpe12g01030 Cpe-Chr12:8591984 8.26E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g612 . . . . . . . . Cmo05g00344 . . Cma05g00341 . . . . . Bhi04g00070 . . . . . Lcy13g1845 . . . . . . . . . . Cone20ag0308 . . . Cme03g01561 . . . . . . . . . . . . . . Car05g00286 Cpe11g00286 . . . . . . . . Cla08g01378 . . . . . . Lsi08g01262 . Chy03g01071 .
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011939 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00286 Cpe_Chr11 FPKM 6.720345 7.385166 8.284543 7.394666 2.978256 3.418604 2.389677 2.550294 2.487563 2.498859