Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00290 ATGAGTTCATTTTCCATCACTCGGAAAAAGACTCCTTTCCAAAAGCACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGAGGATGAAACTGCTCGATTGTATGCGGAATTTGTGGAGTCATTTCAAGGAGATAATGCACCTGGGTCCAAGACTTTTGTTCGTGGAGGAACTATCAACCCCAACGAGAAATTGAAGAGTGAATCTGAGGGTGAAAAGGCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGACAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATTGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGATGAGGGAAAGACGAAATCAGGATCGCGAACATTGGCGTGAAGGACGCCTTGGAGAAAACTTAACACCATCTAGTCGTTTTGACGAACTGCCGGATGACTTTGATCCTAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACAACTAACCTTTATGTAGGAAATTTATCTCCTCAGGTTGATGAGAATTTTCTCCTTCGAACTTTTGGAAGATTTGGACCGATTGCTAGTGTGAAGATAATGTGGCCAAGGACAGAGGAGGAGCGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAAGGAGTTGTTGTTTATGGGTATGAACTGAAAATCGGATGGGGAAAGTCTGTCGCTCTTCCATCCCAAGCATTACCTGCGCCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTTACTTCTGTCCCAAACCAAAATTCTGAGCTGGTTCTAACACCCAACATTCCTGATATTACTGTCGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTATATGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGTAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGAAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTTGAGGAGTCTGGTGCCACATATGCTGCTGGAAGAACCAGACGCGTGGAGCTTGAAAGAACATTGACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCACTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTCGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCTAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCCGTTAAGAATGCATCTGCATACCGTACTAAATTTGAAGCAACATTACCTGACATCATGGAGAGCTTCAATGATCTATATCGTAGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTATTGAAATTATTGCAAGTATGGTCAGATTGGTTTCTGTTCTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTCCTTCGCTTAGGAAACTCTGGTGTGACCTCCTTTCATTCATTATGTGGCGATGCCCCAGAGATTGAACGGCAGGCCAATTGTGAAGAGTTAGGAGATGGGAGCAAAATCAATCAAGATGCTGAATTGGCAATGGGCAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTCGGAGAATTGGAAAGAAGGTGTAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAACTTGATGAAGACTTAAAATATAGTAATTCTCGTACTGTAAGATATTCAAGTAGTTCAAAGGAAACTAAGGTTGAACGAAATCCAGCCGAAATTTCTGGTTGGAACCATTTTGGAGACGATGACGCAAATTTCCAGAGGATGGGTTCTGTACCTATGGCTCAAACTCTTTCAATTCCACAGCCTGAACTAAAAAGTTTCACCAAGTCTGGGAAAAATGATCCCGTTTTGCCGGCCTCTAAATGGGCTAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTCCTAGGGGTCTCGGGTTGAGCTATTCATCTTCAGGAAGTGAAAATGCAGGAGATGGTCTCAGTAAATCTGATGAGATGGAGATTACTACGGAAGCAAGTGTCCTTATGCAGCCTGATACTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGGCGTGTTGAGGTGGCTTTGATAGAATATCGTGAATCTTTGGAGGAACGAGGCATCAAAAGTGTAGAGGAAATAGAGAGGAGAGTTTTGATTTATCGAAAACAACTAGAATCTGAATATGGACTGTCAGACTCCAATGAGGCTGCATCAAGGAAGAAGAGGAGGGATAGAGCAGATGATAGCCATGATTCATTAAGGAAGCTGCAGCGTAGCCAGAGCCATAGCGACAGCCCAGTACGAAAGTCATCCAACCGAGATAGGGACAGAGAAAATGACATTGACAGGGAGCGAGAAAGATTACGAGACAGGGACCGCGAAAAGAGTGGAAGCAGAGAAAGGGATGACCACGACCGAGATAGAGGTAAAGAAAGAGATAGGGATAGAAGAAGACGAGCAAAATGA 2874 44.26 MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSESEGEKAKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELDKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREHWREGRLGENLTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEEDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEESGATYAAGRTRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVTSFHSLCGDAPEIERQANCEELGDGSKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSRTVRYSSSSKETKVERNPAEISGWNHFGDDDANFQRMGSVPMAQTLSIPQPELKSFTKSGKNDPVLPASKWAREDDESDNEQKGGPRGLGLSYSSSGSENAGDGLSKSDEMEITTEASVLMQPDTGLNEEQRQKLRRVEVALIEYRESLEERGIKSVEEIERRVLIYRKQLESEYGLSDSNEAASRKKRRDRADDSHDSLRKLQRSQSHSDSPVRKSSNRDRDRENDIDRERERLRDRDREKSGSRERDDHDRDRGKERDRDRRRRAK 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1566810 1581652 - Cp4.1LG11g02870.1 Cpe11g00290 477084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00290 957 Coils Coil 447 467 - -
Cpe11g00290 957 Coils Coil 817 837 - -
Cpe11g00290 957 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Cpe11g00290 957 SMART cwf21_2 816 865 IPR013170 -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 860 957 - -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 99 151 - -
Cpe11g00290 957 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Cpe11g00290 957 MobiDBLite consensus disorder prediction 691 716 - -
Cpe11g00290 957 Pfam CID domain 449 577 IPR006569 -
Cpe11g00290 957 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Cpe11g00290 957 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Cpe11g00290 957 PANTHER RNA PROCESSING PROTEIN LD23810P 5 952 - -
Cpe11g00290 957 Coils Coil 17 37 - -
Cpe11g00290 957 Gene3D - 443 587 IPR008942 -
Cpe11g00290 957 Pfam cwf21 domain 817 863 IPR013170 -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 757 772 - -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 65 80 - -
Cpe11g00290 957 SUPERFAMILY RNA-binding domain, RBD 179 277 IPR035979 GO:0003676
Cpe11g00290 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 261 IPR000504 GO:0003723
Cpe11g00290 957 SUPERFAMILY ENTH/VHS domain 444 583 IPR008942 -
Cpe11g00290 957 SMART 558neu5 449 584 IPR006569 -
Cpe11g00290 957 SMART rrm1_1 187 263 IPR000504 GO:0003723
Cpe11g00290 957 MobiDBLite consensus disorder prediction 11 35 - -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 742 822 - -
Cpe11g00290 957 ProSiteProfiles CID domain profile. 442 587 IPR006569 -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 800 817 - -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 870 950 - -
Cpe11g00290 957 CDD RRM_SR140 185 268 IPR035009 -
Cpe11g00290 957 Gene3D - 816 867 - -
Cpe11g00290 957 PANTHER - 5 952 - -
Cpe11g00290 957 MobiDBLite consensus disorder prediction 1 162 - -
Cpe11g00290 957 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Cpe11g00290 957 Gene3D - 97 269 IPR012677 -
Cpe11g00290 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Cpe11g00290 957 MobiDBLite consensus disorder prediction 778 792 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00290 K12842 SR140; U2-associated protein SR140 - csv:101209274 1654.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00326 Cpe11g00290 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00290 Cpe-Chr11:1566810 Cpe13g00235 Cpe-Chr13:1830208 1.20E-08 dispersed
Cpe11g00290 Cpe-Chr11:1566810 Cpe07g00326 Cpe-Chr7:2109211 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00290 Cpe_Chr11 FPKM 0.606809 1.55461 4.329206 3.147221 7.464599 7.455894 6.789036 0.837441 1.312542 1.988848