Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00294 ATGAAGTTCATGAAGTTGGGATCGAAACCGGACGCTTTTCTAGCCGATGGAAAAACCACTCGGTATGTTTCATCAGAATTGCCCACGGACGTTACCATTTTTGTCGGTGAAGTAAAGTTTCGTGTTCATAAGTTTCCTCTGTTGTCCAAGAGCAATTGCTTGCAAAAACTAGTATCAAAAGCCAATGAGGAGAATTCCGAAGAAATTCATTTGATTGATTTTCCTGGTGGACCTAAGGCATTTGAAATATGTGCAAAGTTTTGCTATGGAATCACTGTTACTCTTAATGCCTATAATGTTGTGGCTGCTCGTTGTGCTGCTGAATTCCTCGAAATGACCGAGGATATCGAAAAAGGAAACCTTGTATTCAAGATCGAGGTGTTCCTAAACTCTAGCATCTTTCGTAGTTGGAAAGACTCCATCATTGTGCTCCAAACATCCAAATCTCTTCTTCCATGGTCTGAAGATTTGAATATTGTAGGGAGATGTATCGATTCGATTGCCTCGAAAACTTCTGTGGACCCTGCAAATATCACATGGTCTTACACATATAACAGGAAACTTGCAGAGGTAGATAGAATTGTAGATGATGGAATGAAGGGTCAAAAGAAAATTGACTGTGTACCAAACGACTGGTGGGTTGAAGATGTTTGTGAGCTAGAGATTGATCTATATAGGCGTGTTATGATTGCTGTGAAATCAAAGGGAAGAATGGACGGTTCTGTAATTGGGGAGGCGCTTAAAACTTATGCTGTTAGATGGCTACCAGACACTGTAAATGCTTTGGCCTCTGATGCCCATATTAAGAGGAACAGGTCTCTCATTGAAACAATCATTTGCTTATTGCCATCCGACAGAACCACAGGTTGCTCATGCGGTTTCTTGCTCAAACTCATGAAGGTTGCCATTTTGGTTGGAGCCGATGATGCATCGAGGGAAGATTTGGTGAAGAGAATTAGCTTGAAGCTACATGAGGCTTCAGTCAAAGATTTATTGATTCTTGCACAATCTCCCCAGATTACAAGATATGATGTTGACTTGGTTCATAGGATTGTGAATCAGTATTTTGTTCATCATAAGTTCAACCGAGATTCGGATGATATCGAGCGGAGCGAGAAAGGAGCTGATAATCTTTTACTGGGGCATGGGTCCTCATTGAATGTAGCTAAATTGATTGACGAGTATCTTGCTGAAATTGCAGATGACCCGAGTCTCTTACTCGCTAGGTTCATCGACTTGTCACAGTCGATTCCTGAATTTGCAAGGCCAATACATGATAGATTATATAAAGCAATCGACATTTATCTTAAGGTTCACCCAAATTTGACAAAAGCTGATAAGAGGAAGATATGTGGTCTGATTGATGTCAAGAAACTTACAACGGAGGCGTCGATGCATGCAGCGCAGAATGAACGGCTCCCACTTAGAGTTGTCGTTCAAGTTCTCTTCTTTGAACAGGTTAGAGTCTCAGCTGGTGTCGAAGCACAAAACAACAACAACAACTCTCGAGACTCGTCGAGTGCAATGACGAGCATAGACGAAGAATGCCCGAAGGAGTTGGACAACAGCAAGTCCCTAAAACACAATGTGGGGCACATGACGATAAATGAAGACATTCAGAAAACTCAGTTGGCTAAGAAGAGCAGCAAGAACAGTAGAAGTGGAATGAAGCTGTTGCCTTCAAGGTCGAGGAGAATTTTCGATAAGTTATGGATCGTAGGTAAAGGTCATGGGGAAGGTCGGAGTCCCGAAACGTCGGGGAGTTCTCAGAGTCCAACTTCAGTGGTTCCTGTGCATATGAAGTCTTCTGGTACGTATACAAGACAGAGGCGGCACTCAATATCTTAG 1848 42.32 MKFMKLGSKPDAFLADGKTTRYVSSELPTDVTIFVGEVKFRVHKFPLLSKSNCLQKLVSKANEENSEEIHLIDFPGGPKAFEICAKFCYGITVTLNAYNVVAARCAAEFLEMTEDIEKGNLVFKIEVFLNSSIFRSWKDSIIVLQTSKSLLPWSEDLNIVGRCIDSIASKTSVDPANITWSYTYNRKLAEVDRIVDDGMKGQKKIDCVPNDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVNALASDAHIKRNRSLIETIICLLPSDRTTGCSCGFLLKLMKVAILVGADDASREDLVKRISLKLHEASVKDLLILAQSPQITRYDVDLVHRIVNQYFVHHKFNRDSDDIERSEKGADNLLLGHGSSLNVAKLIDEYLAEIADDPSLLLARFIDLSQSIPEFARPIHDRLYKAIDIYLKVHPNLTKADKRKICGLIDVKKLTTEASMHAAQNERLPLRVVVQVLFFEQVRVSAGVEAQNNNNNSRDSSSAMTSIDEECPKELDNSKSLKHNVGHMTINEDIQKTQLAKKSSKNSRSGMKLLPSRSRRIFDKLWIVGKGHGEGRSPETSGSSQSPTSVVPVHMKSSGTYTRQRRHSIS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1598981 1604183 + Cp4.1LG11g02920.1 Cpe11g00294 477088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00294 615 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Cpe11g00294 615 SUPERFAMILY POZ domain 21 114 IPR011333 -
Cpe11g00294 615 Pfam BTB/POZ domain 26 116 IPR000210 GO:0005515
Cpe11g00294 615 MobiDBLite consensus disorder prediction 575 615 - -
Cpe11g00294 615 MobiDBLite consensus disorder prediction 495 512 - -
Cpe11g00294 615 MobiDBLite consensus disorder prediction 534 558 - -
Cpe11g00294 615 Pfam NPH3 family 211 464 IPR027356 -
Cpe11g00294 615 CDD BTB_POZ_NPY3-like 21 124 - -
Cpe11g00294 615 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 599 IPR029961 GO:0060918|GO:0099402
Cpe11g00294 615 MobiDBLite consensus disorder prediction 534 559 - -
Cpe11g00294 615 Gene3D Potassium Channel Kv1.1; Chain A 9 122 IPR011333 -
Cpe11g00294 615 PANTHER OS12G0117600 PROTEIN 4 599 IPR043454 -
Cpe11g00294 615 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Cpe11g00294 615 SMART BTB_4 29 127 IPR000210 GO:0005515
Cpe11g00294 615 MobiDBLite consensus disorder prediction 495 516 - -
Cpe11g00294 615 MobiDBLite consensus disorder prediction 582 615 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00294 - - - cpep:111805726 1212.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00324 Cpe11g00294 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00477 Cpe-Chr10:2806995 Cpe11g00294 Cpe-Chr11:1598981 0 dispersed
Cpe10g00732 Cpe-Chr10:4189023 Cpe11g00294 Cpe-Chr11:1598981 3.30E-128 dispersed
Cpe11g00294 Cpe-Chr11:1598981 Cpe14g00271 Cpe-Chr14:1569654 7.13E-179 dispersed
Cpe15g00697 Cpe-Chr15:7492864 Cpe11g00294 Cpe-Chr11:1598981 1.48E-71 dispersed
Cpe11g00294 Cpe-Chr11:1598981 Cpe07g00324 Cpe-Chr7:2091722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00294 Cpe_Chr11 FPKM 4.531927 4.135335 3.765012 4.665155 8.481282 9.878496 9.373316 10.925892 10.346361 10.507595