Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00306 ATGCCCAGACCACAACAAAGATTCCGCGGCGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAAGCCGCGCGCCTCATGTGCGGGCCGAGGGCGCGCACTAACTTCCCTTACGACGCCTCTCTGTCGCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTACACCGCTGCTACATGGCCTCCTTGCAACTCACCAAGCAATCCTCCTCTGCCGCACGTCGCCCTCAAACCGACACAATCCGAACCGATGTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAACCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGGGAGCCGTTGGATGATGATCATATTCAGCAGATGATCGATGAGCTACTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGACTGCAGGCTCAGCCCATTTGA 540 57.96 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDVSVTSGIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1659772 1660609 - Cp4.1LG11g03060.1 Cpe11g00306 477100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00306 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 172 - -
Cpe11g00306 179 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cpe11g00306 179 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cpe11g00306 179 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cpe11g00306 179 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cpe11g00306 179 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cpe11g00306 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 172 - -
Cpe11g00306 179 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cpe11g00306 179 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cpe11g00306 179 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01626 Cpe-Chr2:13608456 Cpe11g00306 Cpe-Chr11:1659772 7.93E-48 dispersed
Cpe04g01183 Cpe-Chr4:10052860 Cpe11g00306 Cpe-Chr11:1659772 1.99E-31 dispersed
Cpe11g00306 Cpe-Chr11:1659772 Cpe11g01069 Cpe-Chr11:8969543 1.09E-34 dispersed
Cpe11g00306 Cpe-Chr11:1659772 Cpe12g00767 Cpe-Chr12:6986397 3.49E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50221 PF00847 AP2 1.90E-11 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00306 - - cmax:111491817 326.25