Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00311 ATGGCTTTTCGCAACCAACTCTCTCAGGACCTTCCTCTTCATTATGAGAACCAGTCTCAACCGGAACGGCCGCTTTCTGATAACACGCTGCGCTCGATTTTGTCTGATCAACTGGCTGACCATTCTCCGGCCGATGATGGTTCTAAGCCTGAACATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAGCACCTCATTCTCACTTTTCTGATGAGACCACGGCGACCGCTGCGGATAACGTTGACACCGACTTCCTTAATCTTCATACGACTGCTGCCAATTCTGCTGTCTCTCATCCGTCGGGTCAATGGCTCTCCCGCGCGATCCTCCATCGCGATCATAGCGATGTTTTAGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGTGCTACCACTTTGTCGCGCGAATCGGATGATTTGAAGAATAACAGCAGCGGCGGGGATGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCGTATGGTGGAGATGCGGCGACGAATTGGCAGAATGCGCGGTTTAAGGCGGAAATTCTGGCGCATCCTCTTTACGAGCAGCTACTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCAGTGGACCAGTTGCCGAGAGTAGATTCTCAGCTTGCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGTTTGGTCACCGTTCTCAGCCCATAGCCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTATTACTTTGCTCTTTTAAAGAACAACTCCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTGTATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACTGGTGCTACAATGTCTGATGATGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTTGAGGGTCATGATGCTATGGGATTTGGTCCTCTTATCCCAACCGATAGTGAGAGATCCCTTATGGAAAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGATACAAAGAGAAAATTTTAGATATCAGGGAGGAGATTTTGCGAAAAAGGAGAGCAGGTAAGCTTCCTGGTGACACCACGTCCGTCTTGAAAGCTTGGTGGCAATCACATTCAAATTGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAAGAAACTGGGCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACGAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGTTCCCAATCCGATCGGAGAGGCAAACGGCTGCCGGAATCCATGGCGTCCACCTCCGCCTTCTTCTTATTCTCCGATCCCTTCGTCAAAAGTCAGAGCGTAACTCCTCGGATCGTACTGAAACCTCACACTCCGTCTCTTGTTAACTATGACATTGGGAAGAAATGA 1521 48.65 MAFRNQLSQDLPLHYENQSQPERPLSDNTLRSILSDQLADHSPADDGSKPEHPLQSTPNWLNSALLRNQAPHSHFSDETTATAADNVDTDFLNLHTTAANSAVSHPSGQWLSRAILHRDHSDVLDEVADAADAMIGATTLSRESDDLKNNSSGGDGEGVNNSDDVAVESDGNEGAYGGDAATNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRVDSQLARSQNVAAKYSSFGHRSQPIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSFEGHDAMGFGPLIPTDSERSLMERVRHELKHELKNGYKEKILDIREEILRKRRAGKLPGDTTSVLKAWWQSHSNWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKSSQSDRRGKRLPESMASTSAFFLFSDPFVKSQSVTPRIVLKPHTPSLVNYDIGKK 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1683405 1688902 + Cp4.1LG11g03190.1 Cpe11g00311 477105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00311 506 Pfam KNOX2 domain 248 297 IPR005541 GO:0003677|GO:0005634
Cpe11g00311 506 SMART ELK_2 355 376 IPR005539 GO:0003677
Cpe11g00311 506 MobiDBLite consensus disorder prediction 432 449 - -
Cpe11g00311 506 SMART HOX_1 377 442 IPR001356 GO:0003677
Cpe11g00311 506 Pfam KNOX1 domain 190 229 IPR005540 GO:0003677|GO:0005634
Cpe11g00311 506 SUPERFAMILY Homeodomain-like 377 441 IPR009057 -
Cpe11g00311 506 SMART KNOX1_2 187 231 IPR005540 GO:0003677|GO:0005634
Cpe11g00311 506 Gene3D - 376 437 - -
Cpe11g00311 506 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 45 453 - -
Cpe11g00311 506 CDD homeodomain 378 439 IPR001356 GO:0003677
Cpe11g00311 506 MobiDBLite consensus disorder prediction 432 463 - -
Cpe11g00311 506 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 453 - -
Cpe11g00311 506 MobiDBLite consensus disorder prediction 142 158 - -
Cpe11g00311 506 MobiDBLite consensus disorder prediction 39 58 - -
Cpe11g00311 506 MobiDBLite consensus disorder prediction 1 26 - -
Cpe11g00311 506 MobiDBLite consensus disorder prediction 142 178 - -
Cpe11g00311 506 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Cpe11g00311 506 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Cpe11g00311 506 SMART KNOX2_2 243 298 IPR005541 GO:0003677|GO:0005634
Cpe11g00311 506 ProSiteProfiles ELK domain profile. 355 375 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00470 Cpe-Chr2:2662202 Cpe11g00311 Cpe-Chr11:1683405 0 dispersed
Cpe05g00298 Cpe-Chr5:1677903 Cpe11g00311 Cpe-Chr11:1683405 1.58E-43 dispersed
Cpe11g00311 Cpe-Chr11:1683405 Cpe13g00185 Cpe-Chr13:1447129 6.17E-98 dispersed
Cpe11g00311 Cpe-Chr11:1683405 Cpe06g00313 Cpe-Chr6:1740266 0 wgd
Cpe11g00311 Cpe-Chr11:1683405 Cpe07g00308 Cpe-Chr7:1998675 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50222 PF03791 KNOX2 3.40E-19 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00311 - - csv:101213817 769.615