Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00311 | ATGGCTTTTCGCAACCAACTCTCTCAGGACCTTCCTCTTCATTATGAGAACCAGTCTCAACCGGAACGGCCGCTTTCTGATAACACGCTGCGCTCGATTTTGTCTGATCAACTGGCTGACCATTCTCCGGCCGATGATGGTTCTAAGCCTGAACATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAGCACCTCATTCTCACTTTTCTGATGAGACCACGGCGACCGCTGCGGATAACGTTGACACCGACTTCCTTAATCTTCATACGACTGCTGCCAATTCTGCTGTCTCTCATCCGTCGGGTCAATGGCTCTCCCGCGCGATCCTCCATCGCGATCATAGCGATGTTTTAGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGTGCTACCACTTTGTCGCGCGAATCGGATGATTTGAAGAATAACAGCAGCGGCGGGGATGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCGTATGGTGGAGATGCGGCGACGAATTGGCAGAATGCGCGGTTTAAGGCGGAAATTCTGGCGCATCCTCTTTACGAGCAGCTACTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCAGTGGACCAGTTGCCGAGAGTAGATTCTCAGCTTGCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGTTTGGTCACCGTTCTCAGCCCATAGCCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTATTACTTTGCTCTTTTAAAGAACAACTCCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTGTATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACTGGTGCTACAATGTCTGATGATGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTTGAGGGTCATGATGCTATGGGATTTGGTCCTCTTATCCCAACCGATAGTGAGAGATCCCTTATGGAAAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGATACAAAGAGAAAATTTTAGATATCAGGGAGGAGATTTTGCGAAAAAGGAGAGCAGGTAAGCTTCCTGGTGACACCACGTCCGTCTTGAAAGCTTGGTGGCAATCACATTCAAATTGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAAGAAACTGGGCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACGAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGTTCCCAATCCGATCGGAGAGGCAAACGGCTGCCGGAATCCATGGCGTCCACCTCCGCCTTCTTCTTATTCTCCGATCCCTTCGTCAAAAGTCAGAGCGTAACTCCTCGGATCGTACTGAAACCTCACACTCCGTCTCTTGTTAACTATGACATTGGGAAGAAATGA | 1521 | 48.65 | MAFRNQLSQDLPLHYENQSQPERPLSDNTLRSILSDQLADHSPADDGSKPEHPLQSTPNWLNSALLRNQAPHSHFSDETTATAADNVDTDFLNLHTTAANSAVSHPSGQWLSRAILHRDHSDVLDEVADAADAMIGATTLSRESDDLKNNSSGGDGEGVNNSDDVAVESDGNEGAYGGDAATNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRVDSQLARSQNVAAKYSSFGHRSQPIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSFEGHDAMGFGPLIPTDSERSLMERVRHELKHELKNGYKEKILDIREEILRKRRAGKLPGDTTSVLKAWWQSHSNWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKSSQSDRRGKRLPESMASTSAFFLFSDPFVKSQSVTPRIVLKPHTPSLVNYDIGKK | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1683405 | 1688902 | + | Cp4.1LG11g03190.1 | Cpe11g00311 | 477105 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00311 | 506 | Pfam | KNOX2 domain | 248 | 297 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00311 | 506 | SMART | ELK_2 | 355 | 376 | IPR005539 | GO:0003677 | |
Cpe11g00311 | 506 | MobiDBLite | consensus disorder prediction | 432 | 449 | - | - | |
Cpe11g00311 | 506 | SMART | HOX_1 | 377 | 442 | IPR001356 | GO:0003677 | |
Cpe11g00311 | 506 | Pfam | KNOX1 domain | 190 | 229 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00311 | 506 | SUPERFAMILY | Homeodomain-like | 377 | 441 | IPR009057 | - | |
Cpe11g00311 | 506 | SMART | KNOX1_2 | 187 | 231 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00311 | 506 | Gene3D | - | 376 | 437 | - | - | |
Cpe11g00311 | 506 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 45 | 453 | - | - | |
Cpe11g00311 | 506 | CDD | homeodomain | 378 | 439 | IPR001356 | GO:0003677 | |
Cpe11g00311 | 506 | MobiDBLite | consensus disorder prediction | 432 | 463 | - | - | |
Cpe11g00311 | 506 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 45 | 453 | - | - | |
Cpe11g00311 | 506 | MobiDBLite | consensus disorder prediction | 142 | 158 | - | - | |
Cpe11g00311 | 506 | MobiDBLite | consensus disorder prediction | 39 | 58 | - | - | |
Cpe11g00311 | 506 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cpe11g00311 | 506 | MobiDBLite | consensus disorder prediction | 142 | 178 | - | - | |
Cpe11g00311 | 506 | ProSiteProfiles | 'Homeobox' domain profile. | 375 | 438 | IPR001356 | GO:0003677 | |
Cpe11g00311 | 506 | Pfam | Homeobox KN domain | 395 | 434 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe11g00311 | 506 | SMART | KNOX2_2 | 243 | 298 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00311 | 506 | ProSiteProfiles | ELK domain profile. | 355 | 375 | IPR005539 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00470 | Cpe-Chr2:2662202 | Cpe11g00311 | Cpe-Chr11:1683405 | 0 | dispersed | |
Cpe05g00298 | Cpe-Chr5:1677903 | Cpe11g00311 | Cpe-Chr11:1683405 | 1.58E-43 | dispersed | |
Cpe11g00311 | Cpe-Chr11:1683405 | Cpe13g00185 | Cpe-Chr13:1447129 | 6.17E-98 | dispersed | |
Cpe11g00311 | Cpe-Chr11:1683405 | Cpe06g00313 | Cpe-Chr6:1740266 | 0 | wgd | |
Cpe11g00311 | Cpe-Chr11:1683405 | Cpe07g00308 | Cpe-Chr7:1998675 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50222 | PF03791 | KNOX2 | 3.40E-19 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00311 | - | - | csv:101213817 | 769.615 |