Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00324 ATGCTGTTCCCTAACCCACTTTCTTTCATCTTTGCTCTGCTTCTTTGCCTACCTTTAGCCATTCTCTTTACCATCAACAGCCTCACCACCATTGATTCCGGCGACCCCTCCAATGACCCTTTTGTTTTGCCATTACAATCTCCCAAACTTCCGCCGGAGGATGACGATTTTCTCTTCCCACTTGCCGCCGGTGTCAACGCTACCCCATCGCCGACTCACAAATTGGCCTTCATGTTTCTCACGAATTCCCCTCTTCCTTTTGCTCCTCTTTGGGAATTGTTCTTTGAAAACGTTCCAACCGATCTTTTCAATGTCTATATCCACGCCGATCCCGCCGGGGAATATGACCCTCCTTTCTCCGGCGTATTCGCCCACCGGGTTATCCCCTCCAAACCCACTAGGAGATTTTCCCCTTCTCTCGCCGCCGCTGCCCGCCGCCTTCTCGCTCATGCTCTGCTTCATGATTCTGCTAATTCCATGTTTGCCCTTCTCTCCCCTTCCTGCATTCCTCTTCATTCCTTCAATTTCACTTACAGAACGCTAATTCGCTCCAAGAAGAGCTTCATCGAGATTCTCAGAAACGAAATCGGCGCGTTTGATAGGTGGGCGGTACGTGGCCCGGACGTGATGCTTCCGGTGGTTAAATTGGCGGATTTTCGAATTGGGTCGCAGTTTTGGGTCCTGACACGGCGGCACGCGCCGTTAGTGGTGAGAGATCAGAGGGTTTGGTCGAAATTCAAGCTGCCTTGCGTACGATGGTACATATGTTACCCGGAGGAGAACTATTTCCCGACCTTACTCAACATGTGGGATCGGAGAGGGGTTGTGCCGGCCACACTTACCCACGTGGACTGGAACGGGAGCTTAGACGGCCACCCCCGTACCTACGAGGCATCTGAGGTGGGACAAGACCTGATACGCGAATTGAGAATGGCCCGGCCGAGATACGGCGACGGTGGAATGAGAATTAGAATGAAAAGTAGGCAAAGAGGCGGCGGCGGCGGCGGCCGGAATTGGCCGGTGGGTAAATCTCAGGGGGAGCACCCGTTCTTGTTTGCAAGGAAATTCTCGGCGGAGTCGCTCCAGCCATTGATGAACATATCCATGGACTTCATATTAAGAGATTGA 1128 52.57 MLFPNPLSFIFALLLCLPLAILFTINSLTTIDSGDPSNDPFVLPLQSPKLPPEDDDFLFPLAAGVNATPSPTHKLAFMFLTNSPLPFAPLWELFFENVPTDLFNVYIHADPAGEYDPPFSGVFAHRVIPSKPTRRFSPSLAAAARRLLAHALLHDSANSMFALLSPSCIPLHSFNFTYRTLIRSKKSFIEILRNEIGAFDRWAVRGPDVMLPVVKLADFRIGSQFWVLTRRHAPLVVRDQRVWSKFKLPCVRWYICYPEENYFPTLLNMWDRRGVVPATLTHVDWNGSLDGHPRTYEASEVGQDLIRELRMARPRYGDGGMRIRMKSRQRGGGGGGRNWPVGKSQGEHPFLFARKFSAESLQPLMNISMDFILRD 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1730946 1732073 - Cp4.1LG11g03240.1 Cpe11g00324 477118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00324 375 Pfam Core-2/I-Branching enzyme 75 309 IPR003406 GO:0016020|GO:0016757
Cpe11g00324 375 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 3 375 IPR044174 GO:0016757
Cpe11g00324 375 PANTHER CORE-2/I-BRANCHING ENZYME 3 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00324 - - - csv:101207162 556.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00300 Cpe11g00324 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00324 Cpe-Chr11:1730946 Cpe01g00805 Cpe-Chr1:4812316 1.55E-46 dispersed
Cpe18g00223 Cpe-Chr18:3882831 Cpe11g00324 Cpe-Chr11:1730946 9.25E-71 transposed
Cpe11g00324 Cpe-Chr11:1730946 Cpe07g00300 Cpe-Chr7:1953049 8.63E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g488 . . Bda01g00748 . . Bpe02g00560 . . Cmo05g00380 Cmo12g00291 . Cma05g00379 . Car12g00323 Sed03g1616 Cpe07g00300 . Bhi04g00944 Tan02g2729 Cmetu03g0580 . Hepe10g0245 . Lcy13g1795 . . . . . . . Cone4ag1782 Cone7ag1697 . Cone20ag0673 . . . Cme03g01610 . . . . . . . . . . . . Cma12g00342 . Car05g00322 Cpe11g00324 . . . . . . . . Cla08g01339 Cam08g1801 Cec08g1380 Cco08g1508 Clacu08g1495 . Cre08g1282 Lsi08g01210 . Chy03g01115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008502 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00324 Cpe_Chr11 FPKM 19.189154 20.549133 24.31863 23.87096 28.461416 29.263126 29.562853 26.219164 26.025745 23.360716