Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00330 ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCGGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGGTTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATTCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGCAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCACTAGTTCTGTGCCATACGAGGGAGCTTGCATACCAGATCTGTCATGAATTTGAGAGGTTCAGCACTTATCTTCCCGATCTAAAGGTTGCTGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGACAAGGACCTATCTCTGAAGAACGTCCGACATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCCCTTGATATGCGGAGAGACGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTCTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGACGAGGCAAAGCTGACCTTGCATGGTCTTGTCCAGCATTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGCTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGAGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAAGAAGAGAGGTTGACTCGATACAAGGGCTTTAAAGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATTTGCACAGAGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCGGAGCAGATCGATACATCCACATACATGCCATCATAG 1284 42.99 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1758701 1763953 + Cp4.1LG11g03160.1 Cpe11g00330 477124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00330 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cpe11g00330 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Cpe11g00330 427 SMART ultradead3 65 266 IPR014001 -
Cpe11g00330 427 Gene3D - 259 426 IPR027417 -
Cpe11g00330 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Cpe11g00330 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Cpe11g00330 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Cpe11g00330 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Cpe11g00330 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Cpe11g00330 427 MobiDBLite consensus disorder prediction 1 22 - -
Cpe11g00330 427 Gene3D - 42 258 IPR027417 -
Cpe11g00330 427 CDD SF2_C_DEAD 263 392 - -
Cpe11g00330 427 CDD DEADc_DDX39 45 252 - -
Cpe11g00330 427 MobiDBLite consensus disorder prediction 1 29 - -
Cpe11g00330 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cpe11g00330 427 SMART helicmild6 302 383 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00294 Cpe11g00330 CCT
Cpe07g00294 Cpe11g00330 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01722 Cpe-Chr3:13059769 Cpe11g00330 Cpe-Chr11:1758701 6.92E-81 dispersed
Cpe08g00529 Cpe-Chr8:3428920 Cpe11g00330 Cpe-Chr11:1758701 5.91E-77 dispersed
Cpe11g00330 Cpe-Chr11:1758701 Cpe05g00622 Cpe-Chr5:3774051 1.38E-62 dispersed
Cpe11g00330 Cpe-Chr11:1758701 Cpe07g00294 Cpe-Chr7:1917391 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00330 K12812 - csv:101217346 835.484