Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00330 | ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCGGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGGTTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATTCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGCAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCACTAGTTCTGTGCCATACGAGGGAGCTTGCATACCAGATCTGTCATGAATTTGAGAGGTTCAGCACTTATCTTCCCGATCTAAAGGTTGCTGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGACAAGGACCTATCTCTGAAGAACGTCCGACATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCCCTTGATATGCGGAGAGACGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTCTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGACGAGGCAAAGCTGACCTTGCATGGTCTTGTCCAGCATTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGCTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGAGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAAGAAGAGAGGTTGACTCGATACAAGGGCTTTAAAGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATTTGCACAGAGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCGGAGCAGATCGATACATCCACATACATGCCATCATAG | 1284 | 42.99 | MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1758701 | 1763953 | + | Cp4.1LG11g03160.1 | Cpe11g00330 | 477124 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00330 | 427 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 115 | 394 | IPR027417 | - | |
Cpe11g00330 | 427 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724 | |
Cpe11g00330 | 427 | SMART | ultradead3 | 65 | 266 | IPR014001 | - | |
Cpe11g00330 | 427 | Gene3D | - | 259 | 426 | IPR027417 | - | |
Cpe11g00330 | 427 | Pfam | DEAD/DEAH box helicase | 71 | 236 | IPR011545 | GO:0003676|GO:0005524 | |
Cpe11g00330 | 427 | Pfam | Helicase conserved C-terminal domain | 276 | 383 | IPR001650 | - | |
Cpe11g00330 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 250 | IPR014001 | - | |
Cpe11g00330 | 427 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 27 | 422 | - | - | |
Cpe11g00330 | 427 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 27 | 422 | - | - | |
Cpe11g00330 | 427 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cpe11g00330 | 427 | Gene3D | - | 42 | 258 | IPR027417 | - | |
Cpe11g00330 | 427 | CDD | SF2_C_DEAD | 263 | 392 | - | - | |
Cpe11g00330 | 427 | CDD | DEADc_DDX39 | 45 | 252 | - | - | |
Cpe11g00330 | 427 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cpe11g00330 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 278 | 423 | IPR001650 | - | |
Cpe11g00330 | 427 | SMART | helicmild6 | 302 | 383 | IPR001650 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g00294 | Cpe11g00330 | CCT | |
Cpe07g00294 | Cpe11g00330 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01722 | Cpe-Chr3:13059769 | Cpe11g00330 | Cpe-Chr11:1758701 | 6.92E-81 | dispersed | |
Cpe08g00529 | Cpe-Chr8:3428920 | Cpe11g00330 | Cpe-Chr11:1758701 | 5.91E-77 | dispersed | |
Cpe11g00330 | Cpe-Chr11:1758701 | Cpe05g00622 | Cpe-Chr5:3774051 | 1.38E-62 | dispersed | |
Cpe11g00330 | Cpe-Chr11:1758701 | Cpe07g00294 | Cpe-Chr7:1917391 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00330 | K12812 | - | csv:101217346 | 835.484 |