Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00334 | ATGCAGGAGCAAGCGACGAGTTCCGCCGCCGCTAGCTCTTTACCTTCGAGCAGTGAAAGATCGTCCAGCTCTGCTCTTCACCTCGAAGTGAAAGAAGGAATGGAGAGTGATGAAGAGATCCGGAGAGTGCCGGAGATAGGCGGCGAATCCGCCGGAACATCGGCGTCCGGCAGGGAGACCGGTTTGTTGGCCGGTCCGGACCGGGTTCAGGTTTCTCGGGAGAGTCAGAGGAAGAGAGGGAGAACTCCGGCTGACAAAGAGAGCAAGAGATTGAAGAGATTGCTGAGAAATAGAGTATCAGCACAGCAAGCGAGGGAGAGGAAAAAGGCGTATTTGAATGACTTAGAGATAAGGGTGAAGGATTTGGAGAAGAAGAACTCAGAACTTGAAGAAAGGCTTTCCACTTTACAGAATGAGAATCAGATGCTTAGACAAATTTTGAAGAACACAACGGCAAGTCGGAGAAGTGGGGAGTGA | 477 | 50.94 | MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRETGLLAGPDRVQVSRESQRKRGRTPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEIRVKDLEKKNSELEERLSTLQNENQMLRQILKNTTASRRSGE | 158 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1775675 | 1777333 | - | Cp4.1LG11g03290.1 | Cpe11g00334 | 477128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00334 | 158 | CDD | bZIP_HY5-like | 90 | 141 | - | - | |
Cpe11g00334 | 158 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 92 | 107 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe11g00334 | 158 | MobiDBLite | consensus disorder prediction | 30 | 45 | - | - | |
Cpe11g00334 | 158 | Gene3D | Single helix bin | 108 | 149 | - | - | |
Cpe11g00334 | 158 | Coils | Coil | 84 | 153 | - | - | |
Cpe11g00334 | 158 | SUPERFAMILY | Leucine zipper domain | 89 | 147 | IPR046347 | GO:0003700|GO:0006355 | |
Cpe11g00334 | 158 | Pfam | bZIP transcription factor | 86 | 147 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe11g00334 | 158 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 1 | 155 | IPR044280 | GO:0000981|GO:0045944 | |
Cpe11g00334 | 158 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cpe11g00334 | 158 | SMART | brlzneu | 85 | 149 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe11g00334 | 158 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 150 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe11g00334 | 158 | PRINTS | cAMP response element binding (CREB) protein signature | 84 | 100 | - | - | |
Cpe11g00334 | 158 | PRINTS | cAMP response element binding (CREB) protein signature | 102 | 122 | - | - | |
Cpe11g00334 | 158 | PRINTS | cAMP response element binding (CREB) protein signature | 122 | 139 | - | - | |
Cpe11g00334 | 158 | MobiDBLite | consensus disorder prediction | 71 | 93 | - | - | |
Cpe11g00334 | 158 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
Cpe11g00334 | 158 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 1 | 155 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g00288 | Cpe11g00334 | CCT | |
Cpe02g00460 | Cpe11g00334 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g01349 | Cpe-Chr8:9718011 | Cpe11g00334 | Cpe-Chr11:1775675 | 8.54E-07 | dispersed | |
Cpe11g00334 | Cpe-Chr11:1775675 | Cpe17g00230 | Cpe-Chr17:1473138 | 6.50E-07 | dispersed | |
Cpe11g00334 | Cpe-Chr11:1775675 | Cpe02g00460 | Cpe-Chr2:2612716 | 2.64E-45 | wgd | |
Cpe11g00334 | Cpe-Chr11:1775675 | Cpe07g00288 | Cpe-Chr7:1900392 | 1.29E-82 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50224 | PF00170 | bZIP_1 | 2.00E-14 | CL0018 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00334 | K16241 | - | csv:101218051 | 265.774 |