Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00336 ATGATGGAACAACTTCCTCCCGCTAATTTCGAATGTAGTATCTATCGAGTTCCTAAATTGCTACGTAAAATGAATAATGCAGCCTATACCCCTCAAGTCATTTCCATAGGTCCATTTCACCATCGTCGAAAGGATTTGATAGCCACAGAACAATATAAGCTTCGACGTTGTGTTGACTTTCTAAACCGTCTAGATAACAAGATGAACTCGTTGGAGCTCCTTGTGAAAGCTACTCAAAATTGGGTGAAAAATGCTCGAAATTACTATGCCGAACCCATACATATGTGTGATAAAGATTTTCATAAAATGATGCTTGTGGATGGTTGTTTCATACTGGAGTTTTTGATACAACATTATGACCAATGCCTCTCAAATGTTTCCTCCGAAACCCAAAAATATTTAGATCTTTCCTTCCACCAAAGATATCATGAGATATATACTGATTTGGTTATGTTGGAAAATCAAGTCCCTTTCTTTGTTCTTCAATCTCTGTTCCATCTTATACCACACAATAAAACCTCCATCCCGTTTCTAACATTAACACGTGAGTTTTTATTACCTAGACTTGTTAATTATTCTCTTTTTGATTCATCGTTGACAAAACCAAAGCACTTCGTCGATTTCTTAAGTTTCTACTTTGTCGTCGATAATAAATCTCTAAAGGACAACAAAAATAATTATTGTCTGAGAACTCCTCCATCGATAACTGAACTTTATGAAGCTGGTGTCACCATTAAGAAAGCAAAAGGCGCCAGAAATATGATGGACATAAACTTCAAAAATGGGATTTTAACGATCCCACCTTTAATGATTGATGATTTCTTCGAACCCATCATGCGAAATTTGATAGCATTTGAGCATTTTCCCTTGGAAGACAAGAGCAAGTGTACCCAATATATCACATTCATGGATAAGTTGATAAGCACAGAGAAAGACGTGAGTTTACTTGTGCAAGCTGAAATCATAATCAACAATATTGGAGGCAGTGATAAAGAAGTTTCAAAATTGTTCAACAATCTCTGCAAATTTGTTGAAGAGCGATGTGATGATAAGTTCAACGAGATCAGCAAAGCTTTACGTGATCATTGTAATAAAAGATGGAACAAAGCGAAAGCTTCACTCAAGCATAACTATTTCAATACGCCATGGGCTGCTATCTCCTTCAGTGCTGCAACTTTACTCATTATTCTTACTCTCCTACAAACTATATTCTCTGCGATATCAGCCTTTCCCGAAAACTCAAAAAAATCCATATAA 1257 36.12 MMEQLPPANFECSIYRVPKLLRKMNNAAYTPQVISIGPFHHRRKDLIATEQYKLRRCVDFLNRLDNKMNSLELLVKATQNWVKNARNYYAEPIHMCDKDFHKMMLVDGCFILEFLIQHYDQCLSNVSSETQKYLDLSFHQRYHEIYTDLVMLENQVPFFVLQSLFHLIPHNKTSIPFLTLTREFLLPRLVNYSLFDSSLTKPKHFVDFLSFYFVVDNKSLKDNKNNYCLRTPPSITELYEAGVTIKKAKGARNMMDINFKNGILTIPPLMIDDFFEPIMRNLIAFEHFPLEDKSKCTQYITFMDKLISTEKDVSLLVQAEIIINNIGGSDKEVSKLFNNLCKFVEERCDDKFNEISKALRDHCNKRWNKAKASLKHNYFNTPWAAISFSAATLLIILTLLQTIFSAISAFPENSKKSI 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1781012 1782268 + Cp4.1LG11g03390.1 Cpe11g00336 477130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00336 418 Pfam Plant protein of unknown function 14 397 IPR004158 -
Cpe11g00336 418 PANTHER BNAC04G53230D PROTEIN 2 408 - -
Cpe11g00336 418 PANTHER BNAC04G53230D PROTEIN 2 408 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00336 - - - cpep:111805984 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01019 Cpe-Chr2:9370275 Cpe11g00336 Cpe-Chr11:1781012 2.27E-16 dispersed
Cpe11g00336 Cpe-Chr11:1781012 Cpe11g00339 Cpe-Chr11:1797289 6.19E-06 dispersed
Cpe11g00335 Cpe-Chr11:1778520 Cpe11g00336 Cpe-Chr11:1781012 0 tandem
Cpe11g00336 Cpe-Chr11:1781012 Cpe11g00337 Cpe-Chr11:1782272 2.57E-13 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g454 . . . . . . . . Cmo05g00404 . . Cma05g00393 . . Sed08g1315 . . Bhi04g00983 Tan02g2709 Cmetu01g0189 . Hepe10g0266 . Lcy13g1768 . . . . . . . . . . . . . . Cme03g01633 . . . . . . . . . . . . . . . Cpe11g00336 . . . . . . . . Cla08g01321 Cam08g1782 Cec08g1360 Cco08g1487 Clacu08g1476 . Cre08g1265 Lsi08g01189 . Chy03g01135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000204 0 10 0 0 0 5 0 11 3 11 4 4 8 15 11 14 4 0 7 7 7 2 2 6 7 13 6 8 4 2 171
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00336 Cpe_Chr11 FPKM 8.54902 4.105925 13.258872 18.682262 7.659873 4.70717 7.98769 14.6732 11.883223 17.211721