Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00340 TTGGGACTAAATTTGGAGAGGAATAAAAGAAGCAGGATGAGCAGACCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGCGAGCCTAGGGCTGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACTGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCTAAAGATGACGCTTCCCCTGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCAAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAG 495 52.73 LGLNLERNKRSRMSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASNRPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1823634 1824623 - Cp4.1LG11g03460.1 Cpe11g00340 477134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00340 164 ProSitePatterns Zinc finger RanBP2-type signature. 68 89 IPR001876 -
Cpe11g00340 164 Gene3D - 59 96 - -
Cpe11g00340 164 Gene3D - 6 44 - -
Cpe11g00340 164 Gene3D - 117 156 - -
Cpe11g00340 164 ProSitePatterns Zinc finger RanBP2-type signature. 128 149 IPR001876 -
Cpe11g00340 164 ProSiteProfiles Zinc finger RanBP2 type profile. 64 95 IPR001876 -
Cpe11g00340 164 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 13 161 - -
Cpe11g00340 164 PANTHER ZINC FINGER PROTEIN 13 161 - -
Cpe11g00340 164 Pfam Zn-finger in Ran binding protein and others 64 93 IPR001876 -
Cpe11g00340 164 Pfam Zn-finger in Ran binding protein and others 15 42 IPR001876 -
Cpe11g00340 164 Pfam Zn-finger in Ran binding protein and others 124 153 IPR001876 -
Cpe11g00340 164 ProSiteProfiles Zinc finger RanBP2 type profile. 124 155 IPR001876 -
Cpe11g00340 164 SUPERFAMILY Ran binding protein zinc finger-like 118 156 IPR036443 -
Cpe11g00340 164 ProSitePatterns Zinc finger RanBP2-type signature. 19 38 IPR001876 -
Cpe11g00340 164 SMART zf_4 17 41 IPR001876 -
Cpe11g00340 164 SMART zf_4 126 152 IPR001876 -
Cpe11g00340 164 SMART zf_4 66 92 IPR001876 -
Cpe11g00340 164 SUPERFAMILY Ran binding protein zinc finger-like 7 44 IPR036443 -
Cpe11g00340 164 SUPERFAMILY Ran binding protein zinc finger-like 60 95 IPR036443 -
Cpe11g00340 164 ProSiteProfiles Zinc finger RanBP2 type profile. 15 44 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00340 - - - cmos:111462727 324.324
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00286 Cpe11g00340 CCT
Cpe07g00286 Cpe11g00340 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01659 Cpe-Chr2:13782657 Cpe11g00340 Cpe-Chr11:1823634 2.32E-60 dispersed
Cpe07g01087 Cpe-Chr7:9616779 Cpe11g00340 Cpe-Chr11:1823634 1.07E-06 dispersed
Cpe11g00340 Cpe-Chr11:1823634 Cpe17g00583 Cpe-Chr17:4742357 1.06E-06 dispersed
Cpe11g00340 Cpe-Chr11:1823634 Cpe18g00478 Cpe-Chr18:5671102 3.29E-36 wgd
Cpe11g00340 Cpe-Chr11:1823634 Cpe07g00286 Cpe-Chr7:1891878 4.00E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g452 Blo01g01377 . Bda01g00734 . . Bpe02g00572 . . Cmo05g00409 Cmo12g00277 . Cma05g00396 . Car12g00309 Sed01g1363 Cpe07g00286 . Bhi04g00986 Tan02g2707 Cmetu03g1356 . . . Lcy13g1766 . . . . . . . Cone4ag1804 Cone7ag1712 . . . . . Cme03g01640 . . . . . . . . . . . . Cma12g00327 . Car05g00333 Cpe11g00340 . . . . . . . . Cla08g01315 Cam08g1775 Cec08g1357 Cco08g1477 Clacu08g1471 . Cre08g1258 Lsi08g01180 . Chy03g01140 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001025 2 6 2 1 2 1 5 2 2 2 1 1 4 3 3 5 2 4 4 1 2 3 3 2 3 2 3 5 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00340 Cpe_Chr11 FPKM 2.720297 3.353256 4.178562 3.014807 5.288595 3.937602 3.829123 2.410144 2.181872 1.66016