Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00346 ATGAGCCTGATCGTCCCACTGCCACCAAACCTCCTCCCAGATCCGGCGAACCCGGAATGGATGAGCAAAGGCGACAACGCCTGGCAGATGACGGCGGCGACATTGGTGGGGCTGCAAAGCGTGCCAGGTCTGATAATCCTATACGGCGGGGCAGTGAAGAAGAAATGGGCCATAAACTCAGCCTTCATGGCGCTGTACGCCTTTGCGTGCGTGCTGGTGTGTTGGGTGGGGTGGGGGTACCGGCTGTCGTTTGGGGATAAGTTGCTGCCGTTTTGGGGGAAGCTGAATGTGGCGTTGGACCAGCAGTTTCTGCTGGAACAGGCGTTCAGTGGGAAGCTGCCGTCGGCGACAATGGTGTTCTTTCAATTCGTATTTGCGGCGATTACTCTGGTTTTGATTGCAGGGGCGCTGCTTGGGCGGATGAACTTCTACGCTTGGATGCTGTTCGTGCCGCTTTGGCTTACGTTTTCGTATACGTTTGTGGCGTTTAGTATTTGGAGTCCGAATGGTTTTTTCTTTAAGATGGGACTCATTGATTACTCTGGTGGCTACGTCATTCATTTGTCCTCTGGCGTTGCCGGCTTCACCGCTGCATATTGGGTTGGGCCACGGCTGTCCAAAGACCGAGAAAGCTTCCCTCCAAACAACATTCTTCTAATGCTGGCCGGAGCAGGGCTGCTGTGGATGGGCTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGACGCCTCACTGGCAGTTCTCAACACCCACGTGTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATAATCTTCTTCCGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTAGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCGGCGATTATAATGGGCTTGCTATCCGGATCCATCCCATGGTTCACAATGATGGTGGTTCACAAGAAATCCGCCATCCTCCAAAAAGTGGACGACACAATGGCCGTGTTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTACTACGGCGCCTACAACAAGTACGTTGGCCTTTTCTACGGCTTCAACTCAAAGCAAGTCAAGCTCGGCTTCCGCCAACTCGGCGTCCAGCTCCTTGGTATCCTCTTCGTCACCCTCATAAACATTATCGTCACTAGCCTTATATGCGTCCTCCTCCAATACATCGTGCCACTCCGAATGTCCGAGGAGGACATGGCCATCGGCGACGAGGCCGCCCACGGCGAAGAGGCCTATGCTATTTGGGGCCAGGGCGAGAAGATGGACTCTTCTAAGTACGATATTGAAGTCCCCGTTGTGGCCAAGCATAGGCATGCAGGCCATGTTGAAATGGCATGA 1425 55.65 MSLIVPLPPNLLPDPANPEWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLLPFWGKLNVALDQQFLLEQAFSGKLPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGLLSGSIPWFTMMVVHKKSAILQKVDDTMAVFHTHAIAGSLGGILSGIFAEPRLNFVYYGAYNKYVGLFYGFNSKQVKLGFRQLGVQLLGILFVTLINIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEVPVVAKHRHAGHVEMA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1878520 1880812 - Cp4.1LG11g03410.1 Cpe11g00346 477140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00346 474 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005887
Cpe11g00346 474 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005887
Cpe11g00346 474 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005887
Cpe11g00346 474 PANTHER AMMONIUM TRANSPORTER MEP2 2 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe11g00346 474 TIGRFAM amt: ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe11g00346 474 Gene3D Ammonium transporter AmtB like domains 14 445 IPR029020 -
Cpe11g00346 474 SUPERFAMILY Ammonium transporter 20 423 - -
Cpe11g00346 474 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cpe11g00346 474 PANTHER AMMONIUM TRANSPORTER 2 473 - -
Cpe11g00346 474 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00039 Cpe-Chr3:202500 Cpe11g00346 Cpe-Chr11:1878520 0 dispersed
Cpe10g00697 Cpe-Chr10:4006149 Cpe11g00346 Cpe-Chr11:1878520 0 dispersed
Cpe11g00346 Cpe-Chr11:1878520 Cpe17g00239 Cpe-Chr17:1548409 2.72E-24 dispersed
Cpe11g00346 Cpe-Chr11:1878520 Cpe08g01238 Cpe-Chr8:8977126 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00346 K03320 - csv:101210590 870.537