Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00346 | ATGAGCCTGATCGTCCCACTGCCACCAAACCTCCTCCCAGATCCGGCGAACCCGGAATGGATGAGCAAAGGCGACAACGCCTGGCAGATGACGGCGGCGACATTGGTGGGGCTGCAAAGCGTGCCAGGTCTGATAATCCTATACGGCGGGGCAGTGAAGAAGAAATGGGCCATAAACTCAGCCTTCATGGCGCTGTACGCCTTTGCGTGCGTGCTGGTGTGTTGGGTGGGGTGGGGGTACCGGCTGTCGTTTGGGGATAAGTTGCTGCCGTTTTGGGGGAAGCTGAATGTGGCGTTGGACCAGCAGTTTCTGCTGGAACAGGCGTTCAGTGGGAAGCTGCCGTCGGCGACAATGGTGTTCTTTCAATTCGTATTTGCGGCGATTACTCTGGTTTTGATTGCAGGGGCGCTGCTTGGGCGGATGAACTTCTACGCTTGGATGCTGTTCGTGCCGCTTTGGCTTACGTTTTCGTATACGTTTGTGGCGTTTAGTATTTGGAGTCCGAATGGTTTTTTCTTTAAGATGGGACTCATTGATTACTCTGGTGGCTACGTCATTCATTTGTCCTCTGGCGTTGCCGGCTTCACCGCTGCATATTGGGTTGGGCCACGGCTGTCCAAAGACCGAGAAAGCTTCCCTCCAAACAACATTCTTCTAATGCTGGCCGGAGCAGGGCTGCTGTGGATGGGCTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGACGCCTCACTGGCAGTTCTCAACACCCACGTGTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATAATCTTCTTCCGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTAGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCGGCGATTATAATGGGCTTGCTATCCGGATCCATCCCATGGTTCACAATGATGGTGGTTCACAAGAAATCCGCCATCCTCCAAAAAGTGGACGACACAATGGCCGTGTTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTACTACGGCGCCTACAACAAGTACGTTGGCCTTTTCTACGGCTTCAACTCAAAGCAAGTCAAGCTCGGCTTCCGCCAACTCGGCGTCCAGCTCCTTGGTATCCTCTTCGTCACCCTCATAAACATTATCGTCACTAGCCTTATATGCGTCCTCCTCCAATACATCGTGCCACTCCGAATGTCCGAGGAGGACATGGCCATCGGCGACGAGGCCGCCCACGGCGAAGAGGCCTATGCTATTTGGGGCCAGGGCGAGAAGATGGACTCTTCTAAGTACGATATTGAAGTCCCCGTTGTGGCCAAGCATAGGCATGCAGGCCATGTTGAAATGGCATGA | 1425 | 55.65 | MSLIVPLPPNLLPDPANPEWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLLPFWGKLNVALDQQFLLEQAFSGKLPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGLLSGSIPWFTMMVVHKKSAILQKVDDTMAVFHTHAIAGSLGGILSGIFAEPRLNFVYYGAYNKYVGLFYGFNSKQVKLGFRQLGVQLLGILFVTLINIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEVPVVAKHRHAGHVEMA | 474 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1878520 | 1880812 | - | Cp4.1LG11g03410.1 | Cpe11g00346 | 477140 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00346 | 474 | PRINTS | Rhesus blood group protein signature | 122 | 138 | IPR002229 | GO:0005887 | |
Cpe11g00346 | 474 | PRINTS | Rhesus blood group protein signature | 218 | 236 | IPR002229 | GO:0005887 | |
Cpe11g00346 | 474 | PRINTS | Rhesus blood group protein signature | 249 | 271 | IPR002229 | GO:0005887 | |
Cpe11g00346 | 474 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 2 | 473 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 | |
Cpe11g00346 | 474 | TIGRFAM | amt: ammonium transporter | 25 | 441 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 | |
Cpe11g00346 | 474 | Gene3D | Ammonium transporter AmtB like domains | 14 | 445 | IPR029020 | - | |
Cpe11g00346 | 474 | SUPERFAMILY | Ammonium transporter | 20 | 423 | - | - | |
Cpe11g00346 | 474 | ProSitePatterns | Ammonium transporters signature. | 179 | 204 | IPR018047 | GO:0008519|GO:0016020|GO:0072488 | |
Cpe11g00346 | 474 | PANTHER | AMMONIUM TRANSPORTER | 2 | 473 | - | - | |
Cpe11g00346 | 474 | Pfam | Ammonium Transporter Family | 27 | 441 | IPR024041 | GO:0008519|GO:0016020|GO:0072488 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00039 | Cpe-Chr3:202500 | Cpe11g00346 | Cpe-Chr11:1878520 | 0 | dispersed | |
Cpe10g00697 | Cpe-Chr10:4006149 | Cpe11g00346 | Cpe-Chr11:1878520 | 0 | dispersed | |
Cpe11g00346 | Cpe-Chr11:1878520 | Cpe17g00239 | Cpe-Chr17:1548409 | 2.72E-24 | dispersed | |
Cpe11g00346 | Cpe-Chr11:1878520 | Cpe08g01238 | Cpe-Chr8:8977126 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00346 | K03320 | - | csv:101210590 | 870.537 |