Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00349 ATGTCGACCGCCGTCTTGGTCGCACGCTCTAGCTCCTGGTCTCGTGCTCTCATCAACATCTCTCCGTACACCTTCTCTGCCGTTGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGCGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTTATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCATCATCTCAAATCTATGCCCCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCTAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTCGTGAAGATTCTTGTAATCGAGATCTTCGGCAGTGCACTTGGGTTGTTCGGAGTGATCGTCGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 49.18 MSTAVLVARSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSSSQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1892479 1894249 - Cp4.1LG11g03580.1 Cpe11g00349 477143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00349 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe11g00349 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe11g00349 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cpe11g00349 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cpe11g00349 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cpe11g00349 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00349 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00349 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00349 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00349 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cpe11g00349 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cpe11g00349 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cpe11g00349 182 Gene3D - 23 177 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00379 Cpe-Chr7:2450787 Cpe11g00349 Cpe-Chr11:1892479 6.82E-22 dispersed
Cpe11g00238 Cpe-Chr11:1288221 Cpe11g00349 Cpe-Chr11:1892479 6.82E-22 dispersed
Cpe11g00349 Cpe-Chr11:1892479 Cpe02g00466 Cpe-Chr2:2640372 4.55E-88 wgd
Cpe11g00349 Cpe-Chr11:1892479 Cpe07g00275 Cpe-Chr7:1822398 3.23E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00349 K03661 - csv:101221052 329.331