Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00355 ATGGGCCCAGCAGTTCTGAGTTCCCACACCAATGGCTTCTCCAAATCAGTAGATCGAAACTTCGAAGAGAAAAGCAATTACATCAATGGAGATTCTTCTCATGAATCGGTAATCAATACTGTTAATGGCAACGATTGCTATTGGTTCGAGGAAATCATCGATGAAAATCTCAAATGGTCTTTTGCTCTGAATAGCGTTCTGCAGAAAGGAACCAGCGAGTTTCAGGATATTGCGCTATTAGATACCAAGTGTTTCGGAAAAGCATTGATGATCGACGGGAAGATGCAGAGCGCTGAAGCCGATGAATTCGTCTATCATGAATGCTTGATTCATCCCGCACTATTATGCCATTCCAACCCGAAAACTGTATTCATAATGGGAGGTGGGGAAGGATCAGCAGCCAGAGAAGTCCTCAAACACAAATCAATAGAAAAGGTTGTCATGTGCGATATCGATCAGGATGTAGTGGATTTCTGCCGTAAATATTTGACGGTGAACCACGAGACATTTTGTCACAAAAAACTTCATCTCGTAATAAACGACGCCAAGGCGGAATTGGAAAAGAGAAAGGAGAAATATGATATAATTATAGGAGACCTAGCAGACCCTGTTAAAGATGGGCCTTGCTACAAGCTCTACACCAAATCCTTCTACCAGGAGATCGTCAAGCCAAAGCTCCACGACAATGGCATCTTCGTAACTCAGGCAGGACCTGCCGGAATTTTCACCCACAAAGAGGTTTTTACCTCCATATATAACACAATCAAACACACATTCAACTATGTGATTGCTTACACGGCTTACATACCATCTTTTGCAGACACATGGGGATGGGTTATGGCATCAGATCATCCTTTCTGTATAAAATCTGAGGAATTGGATAAGAGAATTGAAGATAGAATCGATGGGGAGTTGCTCTATTTAACTGGTCCTTCCATTGTGTCCTCCACCATTATCAACAAGATGGTTTCTTTAGCGTTGTTGAACGAAACTCATATCTACACTGAAACTACTGCAAAATTCATACATGGTCAAGGAGTTGGATTCAAGCAACAAAATGGCGGGAGTTGTCGTGGTGTATAA 1083 41.92 MGPAVLSSHTNGFSKSVDRNFEEKSNYINGDSSHESVINTVNGNDCYWFEEIIDENLKWSFALNSVLQKGTSEFQDIALLDTKCFGKALMIDGKMQSAEADEFVYHECLIHPALLCHSNPKTVFIMGGGEGSAAREVLKHKSIEKVVMCDIDQDVVDFCRKYLTVNHETFCHKKLHLVINDAKAELEKRKEKYDIIIGDLADPVKDGPCYKLYTKSFYQEIVKPKLHDNGIFVTQAGPAGIFTHKEVFTSIYNTIKHTFNYVIAYTAYIPSFADTWGWVMASDHPFCIKSEELDKRIEDRIDGELLYLTGPSIVSSTIINKMVSLALLNETHIYTETTAKFIHGQGVGFKQQNGGSCRGV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1936765 1940385 + Cp4.1LG11g03540.1 Cpe11g00355 477149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00355 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 316 IPR029063 -
Cpe11g00355 360 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 38 350 - -
Cpe11g00355 360 Gene3D Vaccinia Virus protein VP39 99 351 IPR029063 -
Cpe11g00355 360 Gene3D Spermidine synthase, tetramerisation domain 47 98 IPR037163 -
Cpe11g00355 360 Hamap Polyamine aminopropyltransferase [speE]. 47 319 IPR001045 GO:0003824
Cpe11g00355 360 Pfam Spermine/spermidine synthase domain 102 282 - -
Cpe11g00355 360 Pfam Spermidine synthase tetramerisation domain 47 99 IPR035246 -
Cpe11g00355 360 PANTHER BNAA02G04280D PROTEIN 38 350 - -
Cpe11g00355 360 CDD AdoMet_MTases 127 235 - -
Cpe11g00355 360 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 46 283 IPR030374 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00355 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - csv:101210030 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00255 Cpe-Chr8:1672752 Cpe11g00355 Cpe-Chr11:1936765 4.30E-141 dispersed
Cpe11g00355 Cpe-Chr11:1936765 Cpe11g01183 Cpe-Chr11:9699811 1.14E-141 dispersed
Cpe11g00355 Cpe-Chr11:1936765 Cpe01g01521 Cpe-Chr1:9109793 2.17E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g146 . . . . Bpe02g01556 . . . Cmo05g00427 Cmo12g00250 . . . . . . . Bhi04g01088 . . . . . . . . . . . . . . . Cone17ag0940 Cone20ag0283 . . . . . Blo18g00262 Bda01g01344 Bda13g01302 . . Bma01g00913 . . . . . . . Car05g00351 Cpe11g00355 . . . . . . . . Cla08g00991 Cam08g1437 Cec08g1016 Cco08g1139 Clacu08g1142 . Cre08g0927 Lsi08g00836 . Chy03g01199 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00355 Cpe_Chr11 FPKM 110.69883 114.683624 91.135277 90.029999 131.413437 119.101341 135.702255 138.279343 143.558655 143.02536