Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00363 ATGGCTGGTATGGCAGCTGAAGGAACCCAATTTGATGCACGTCAATTTGATTCCAAGATGAATGATTTGCTTGGGGGAGATGGGCAAGACTTTTTCACCTCATATGATGAAGTCTATGAGAGTTTTGATTCCATGGGTTTGCAGGAGAATCTCTTAAGAGGAATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGAGGTATTGTTCCATTCTGTAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCCACTTTCTGCTCTGGAATTTTGCAGCAGCTAGATTATGGCCTAGTTGATTGCCAGGCATTAGTTCTCGCACCCACCCGAGAACTGGCACAACAGATCGAAAAGGTTATGCGTGCATTAGGTGATTATCTTGGTGTCAAGGTCCATGCTTGTGTTGGTGGAACCAGTGTTCGCGAAGATCAACGCATTCTCTCAAGTGGTGTCCATGTCGTTGTTGGCACCCCTGGTCGTGTGTTCGATATGCTGCGTAGGCAGTCACTTCGCCCCGATCACATTAAGATGTTTGTGCTGGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATTTACGATATTTTCCAGCTTCTTCCTCCAAAGATTCAGTTTCGATCTGGTTCATCCCGTGTTCTCATTACTACTGATCTCTTGGCTAGGGGAATCGATGTCCAACAAGTTTCCCTCGTCATAAATTTTGATCTTCCTACTCAGCCAGAGAATTACCTCCATCGAATCGGTCGAAGTGGACGATTCGGAAGGAAGGGTGTTGCCATCAATTTTGTGACCACAGAGGATGAAAGAATGCTGTTTGACATCCAAAAGTTCTACAATGTCATGGTCGAGGAGCTGCCAGCAAACTTGAGTTGCCTTTTGGGTTGGGGGGAGTCGACCTTCGTACGGATGAACTTGCCCCGGATCATTGAACATGTCTTCCACGGATTAAATGGATTCTCTATACTTGACTTGACTCTGAGCTGGAATGTTGGAAAAGAAAGAAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATCGAGAGCTATTACGGGCCACCGAAGAGCCAGATTTCTGGGAAAAAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTATCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA 1299 44.73 MAGMAAEGTQFDARQFDSKMNDLLGGDGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVMVEELPANLSCLLGWGESTFVRMNLPRIIEHVFHGLNGFSILDLTLSWNVGKERRRGSYGSSSMQIESYYGPPKSQISGKKDKRSSGSSSKSFKLSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1999303 2004931 + Cp4.1LG11g03660.1 Cpe11g00363 477157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00363 432 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 215 - -
Cpe11g00363 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 216 IPR027417 -
Cpe11g00363 432 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 248 IPR014001 -
Cpe11g00363 432 SMART ultradead3 59 257 IPR014001 -
Cpe11g00363 432 MobiDBLite consensus disorder prediction 346 389 - -
Cpe11g00363 432 CDD SF2_C_DEAD 215 274 - -
Cpe11g00363 432 Pfam Domain of unknown function (DUF3511) 387 430 IPR021899 -
Cpe11g00363 432 PANTHER EUKARYOTIC INITIATION FACTOR 4A-10 215 297 - -
Cpe11g00363 432 PANTHER EUKARYOTIC INITIATION FACTOR 4A-10 6 215 - -
Cpe11g00363 432 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 101 304 IPR001650 -
Cpe11g00363 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 313 IPR027417 -
Cpe11g00363 432 MobiDBLite consensus disorder prediction 347 363 - -
Cpe11g00363 432 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cpe11g00363 432 Pfam DEAD/DEAH box helicase 65 215 IPR011545 GO:0003676|GO:0005524
Cpe11g00363 432 Gene3D - 27 230 IPR027417 -
Cpe11g00363 432 CDD DEADc_EIF4A 45 216 - -
Cpe11g00363 432 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cpe11g00363 432 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 215 297 - -
Cpe11g00363 432 SMART helicmild6 189 265 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01552 Cpe-Chr2:13173787 Cpe11g00363 Cpe-Chr11:1999303 2.32E-105 dispersed
Cpe03g00831 Cpe-Chr3:5222609 Cpe11g00363 Cpe-Chr11:1999303 2.23E-108 dispersed
Cpe06g00246 Cpe-Chr6:1308217 Cpe11g00363 Cpe-Chr11:1999303 1.50E-20 dispersed
Cpe06g00951 Cpe-Chr6:8118133 Cpe11g00363 Cpe-Chr11:1999303 6.76E-11 dispersed
Cpe11g00363 Cpe-Chr11:1999303 Cpe17g00474 Cpe-Chr17:3530045 0 dispersed
Cpe12g00608 Cpe-Chr12:6051862 Cpe11g00363 Cpe-Chr11:1999303 4.36E-18 dispersed
Cpe18g00346 Cpe-Chr18:4892385 Cpe11g00363 Cpe-Chr11:1999303 1.48E-16 dispersed
Cpe11g00363 Cpe-Chr11:1999303 Cpe02g01732 Cpe-Chr2:14178581 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00363 K03257 - aof:109840346 415.616