Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00366 | ATGGCAGAAAAGGAATCCGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGATCAACGAGACATAG | 423 | 51.54 | MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAEINET | 140 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2009655 | 2010077 | + | Cp4.1LG11g03620.1 | Cpe11g00366 | 477160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00366 | 140 | Gene3D | Histone, subunit A | 1 | 91 | IPR009072 | GO:0046982 | |
Cpe11g00366 | 140 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 13 | 76 | IPR003958 | - | |
Cpe11g00366 | 140 | SUPERFAMILY | Histone-fold | 12 | 91 | IPR009072 | GO:0046982 | |
Cpe11g00366 | 140 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 3 | 128 | - | - | |
Cpe11g00366 | 140 | PANTHER | NUCLEAR FACTOR Y, SUBUNIT C13 | 3 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00062 | Cpe-Chr7:302060 | Cpe11g00366 | Cpe-Chr11:2009655 | 4.15E-48 | dispersed | |
Cpe11g00366 | Cpe-Chr11:2009655 | Cpe18g00908 | Cpe-Chr18:8122394 | 2.45E-10 | dispersed | |
Cpe11g00366 | Cpe-Chr11:2009655 | Cpe01g01183 | Cpe-Chr1:7036369 | 1.53E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50228 | PF00808 | CBFD_NFYB_HMF | 3.90E-21 | CL0012 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00366 | - | - | cmo:103488501 | 223.787 |