Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00394 ATATTTCGGGAGCGAGTCGTTGAAAAAAACATCCCTCCGAAGCCGAACCAACCGCGGCGGCGATTAGTCGACAATTGTCAAAAGGGATCGATGCCGAGCATTTCGGCCCTCTATTCCATTGAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATACGATTTGACATCATATTTGGACGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCTACAGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCTCGAGAGCTGATGGAGAAGTTCTATATCGGCGAGCTCGATCCTTCTTCCTCAGCGATCCCAGAACTCGAAACAAAAGAACCAGATGGTTATGCAGCTCGGGTTCAGACCTTGACAAAGCAATACTGGGGGGTTCCTATTGCAGCTGTTCAGAAGAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCAATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCGGATGCGGATACATGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAACTGCACAGGAAAAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAA 942 50.0 IFRERVVEKNIPPKPNQPRRRLVDNCQKGSMPSISALYSIEEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGELDPSSSAIPELETKEPDGYAARVQTLTKQYWGVPIAAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2169898 2174820 + Cp4.1LG11g03860.1 Cpe11g00394 477188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00394 313 CDD RRM_PPIE 152 224 IPR034168 GO:0003723
Cpe11g00394 313 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 66 73 IPR018506 GO:0020037
Cpe11g00394 313 SMART rrm1_1 151 224 IPR000504 GO:0003723
Cpe11g00394 313 Coils Coil 253 280 - -
Cpe11g00394 313 PANTHER TRANSFORMER-2-RELATED 146 312 - -
Cpe11g00394 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 228 IPR000504 GO:0003723
Cpe11g00394 313 MobiDBLite consensus disorder prediction 262 313 - -
Cpe11g00394 313 SUPERFAMILY RNA-binding domain, RBD 143 237 IPR035979 GO:0003676
Cpe11g00394 313 SMART Cyt_b5_2 38 111 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 60 70 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 70 84 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 85 92 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 98 110 IPR001199 -
Cpe11g00394 313 Coils Coil 301 313 - -
Cpe11g00394 313 Pfam Cytochrome b5-like Heme/Steroid binding domain 40 110 IPR001199 -
Cpe11g00394 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 221 IPR000504 GO:0003723
Cpe11g00394 313 Gene3D - 35 119 IPR036400 -
Cpe11g00394 313 Gene3D - 143 262 IPR012677 -
Cpe11g00394 313 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 146 312 - -
Cpe11g00394 313 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 35 111 IPR001199 -
Cpe11g00394 313 MobiDBLite consensus disorder prediction 272 305 - -
Cpe11g00394 313 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 33 115 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00394 - - K09564 mcha:111005196 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01032 Cpe-Chr7:9307162 Cpe11g00394 Cpe-Chr11:2169898 1.54E-20 dispersed
Cpe11g00394 Cpe-Chr11:2169898 Cpe05g00584 Cpe-Chr5:3539455 3.66E-32 dispersed
Cpe11g00394 Cpe-Chr11:2169898 Cpe08g00396 Cpe-Chr8:2509521 3.87E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007837 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00394 Cpe_Chr11 FPKM 31.831783 30.899784 27.667252 29.974632 29.526672 23.974329 26.047817 31.243561 30.066885 31.286526