Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00394 ATATTTCGGGAGCGAGTCGTTGAAAAAAACATCCCTCCGAAGCCGAACCAACCGCGGCGGCGATTAGTCGACAATTGTCAAAAGGGATCGATGCCGAGCATTTCGGCCCTCTATTCCATTGAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATACGATTTGACATCATATTTGGACGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCTACAGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCTCGAGAGCTGATGGAGAAGTTCTATATCGGCGAGCTCGATCCTTCTTCCTCAGCGATCCCAGAACTCGAAACAAAAGAACCAGATGGTTATGCAGCTCGGGTTCAGACCTTGACAAAGCAATACTGGGGGGTTCCTATTGCAGCTGTTCAGAAGAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCAATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCGGATGCGGATACATGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAACTGCACAGGAAAAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAA 942 50.0 IFRERVVEKNIPPKPNQPRRRLVDNCQKGSMPSISALYSIEEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGELDPSSSAIPELETKEPDGYAARVQTLTKQYWGVPIAAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2169898 2174820 + Cp4.1LG11g03860.1 Cpe11g00394 477188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00394 313 CDD RRM_PPIE 152 224 IPR034168 GO:0003723
Cpe11g00394 313 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 66 73 IPR018506 GO:0020037
Cpe11g00394 313 SMART rrm1_1 151 224 IPR000504 GO:0003723
Cpe11g00394 313 Coils Coil 253 280 - -
Cpe11g00394 313 PANTHER TRANSFORMER-2-RELATED 146 312 - -
Cpe11g00394 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 228 IPR000504 GO:0003723
Cpe11g00394 313 MobiDBLite consensus disorder prediction 262 313 - -
Cpe11g00394 313 SUPERFAMILY RNA-binding domain, RBD 143 237 IPR035979 GO:0003676
Cpe11g00394 313 SMART Cyt_b5_2 38 111 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 60 70 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 70 84 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 85 92 IPR001199 -
Cpe11g00394 313 PRINTS Cytochrome B5 signature 98 110 IPR001199 -
Cpe11g00394 313 Coils Coil 301 313 - -
Cpe11g00394 313 Pfam Cytochrome b5-like Heme/Steroid binding domain 40 110 IPR001199 -
Cpe11g00394 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 221 IPR000504 GO:0003723
Cpe11g00394 313 Gene3D - 35 119 IPR036400 -
Cpe11g00394 313 Gene3D - 143 262 IPR012677 -
Cpe11g00394 313 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 146 312 - -
Cpe11g00394 313 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 35 111 IPR001199 -
Cpe11g00394 313 MobiDBLite consensus disorder prediction 272 305 - -
Cpe11g00394 313 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 33 115 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01032 Cpe-Chr7:9307162 Cpe11g00394 Cpe-Chr11:2169898 1.54E-20 dispersed
Cpe11g00394 Cpe-Chr11:2169898 Cpe05g00584 Cpe-Chr5:3539455 3.66E-32 dispersed
Cpe11g00394 Cpe-Chr11:2169898 Cpe08g00396 Cpe-Chr8:2509521 3.87E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00394 - K09564 mcha:111005196 328.176