Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00403 ATGGATCGGCCTAAAAAGAGGGAAGTCACGAGCAAAGCATGCGCGCAGCTGTATGGGATTCTTGACGGATGCTTCCCTCTGAAACTCGCTCGTGTTCGGCAGCTGGCAAATCCGGCGGGAGTTGAAGTGTCGGTAGAGAAGGATTGGAGGCGTGGACCGGCCAATCTGAATAAAATCCAAGAAGATGAAGAGTATGAGGACGACGAGATGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTAATAGTAGCATCGGAAATAGCAAAGATGCGAAGAACAACGATAGGGCTAATGCCATACGGTCGAAGCACTCTGTCACCGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGCGATCAGAAGAGAGATACCGCGTCATTTTTATTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCTTATCAGAATTGGAGTGGGGAGCCTACTAAGTTAATACCATGGAGAAACAGTCATTGGCGTATGCAGACTTTTGTTGGTCATCCACAGTCTGTAAAAAATGGTTCTGCTTCAGGACCAACGTTTTCAGGGAAGTTTGATGACAACAACATTTCAATTTCCCCAGCCATGCTTGCAAGCTCACAAAATCCCCTCGACTCCCATTCAGGCAGAGATGTTCTGCAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATATACATGCTTCTATCCGTAGTGACGGTGTTCTTGATCAATCTCTCCAGATTCCAATTTCCGGTGGACAGGCAACGGAGTGTCCCATCGCCAACAATGCATCAAGCCAACCGGAAGAGATGGCTATTGAAGGGGGTACAATAAGCATTTCAAGTCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTGTCTCCATTCAGGTTGATCTTGGAAAGAGAGCAAATAAAGGTCTCCCATTTGGAATGCCCATTTTTAAGGAAACTGGCAACCCTTCCTCCTCCGGCCACCCTGCAATGGCACACGTAGGGGACCTGGGTAGTGGAGATGACTCAGAACAAGTGAAAAAGCGGCTAAGAACATGA 1158 46.55 MDRPKKREVTSKACAQLYGILDGCFPLKLARVRQLANPAGVEVSVEKDWRRGPANLNKIQEDEEYEDDEMVAKREGPSSTSNANSSIGNSKDAKNNDRANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTFSGKFDDNNISISPAMLASSQNPLDSHSGRDVLQDADITNKVPLPMSLEGNIHASIRSDGVLDQSLQIPISGGQATECPIANNASSQPEEMAIEGGTISISSLYSEGLLNSLTQALQNTGLDLSQASVSIQVDLGKRANKGLPFGMPIFKETGNPSSSGHPAMAHVGDLGSGDDSEQVKKRLRT 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2225316 2231399 - Cp4.1LG11g04110.1 Cpe11g00403 477197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00403 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 171 IPR036638 GO:0046983
Cpe11g00403 385 MobiDBLite consensus disorder prediction 347 385 - -
Cpe11g00403 385 MobiDBLite consensus disorder prediction 75 95 - -
Cpe11g00403 385 MobiDBLite consensus disorder prediction 54 114 - -
Cpe11g00403 385 Gene3D - 99 171 IPR036638 GO:0046983
Cpe11g00403 385 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 57 385 IPR044295 GO:0003700|GO:0006351|GO:0046983
Cpe11g00403 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 151 IPR011598 GO:0046983
Cpe11g00403 385 PANTHER TRANSCRIPTION FACTOR BIM2 57 385 - -
Cpe11g00403 385 SMART finulus 107 157 IPR011598 GO:0046983
Cpe11g00403 385 MobiDBLite consensus disorder prediction 96 114 - -
Cpe11g00403 385 Pfam Helix-loop-helix DNA-binding domain 103 152 IPR011598 GO:0046983
Cpe11g00403 385 CDD bHLH_AtBIM_like 100 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01439 Cpe-Chr4:11502998 Cpe11g00403 Cpe-Chr11:2225316 1.88E-54 dispersed
Cpe09g01160 Cpe-Chr9:9849272 Cpe11g00403 Cpe-Chr11:2225316 2.19E-52 dispersed
Cpe11g00403 Cpe-Chr11:2225316 Cpe18g00723 Cpe-Chr18:7098155 7.39E-68 dispersed
Cpe11g00403 Cpe-Chr11:2225316 Cpe02g01392 Cpe-Chr2:12184151 4.29E-67 wgd
Cpe11g00403 Cpe-Chr11:2225316 Cpe07g00099 Cpe-Chr7:507789 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50230 PF00010 HLH 2.20E-13 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00403 - - csv:101217750 587.415