Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00405 ATGGTTGGGAGGAGGAACTCTGGAAAGGCTTCCCCACTATTTCTAGTTCTCTTGGCTCTTTCTTTCTGCTTTGTAACTTATAATTTGGTGACAGCTATTATTCAGTATGGATCAATTGGAAGGGAAGTTGGTGATAACTCGTATGACCGATTATCGAATGACCCTATCATTGAAATGCCAGAGAATGTGAGAAAAGGGAAGACAAAGGCACCTTTCCATGTTGCTTTGACAGCGACCGACGCTCCTTATAGTAAATGGCAATGTCGTATTATGTATTACTGGTACAAGAAGAAGAAGAATTTGCCTGAATCTGAGATGGGAGGGTTCACTCGTATTTTACATTCTGGACAACCTGATAACCTAATGGATGAGATTCCTACTATGGTGGTGGATCCACTTCCTGCTGGTGTGGACCGGGGCTACGTCGTCTTGAACAGACCGTGGGCCTTCGTGCAGTGGCTGGAAAAGGCAACAATAGAGGAAGAATATATATTAATGGCAGAACCAGATCATATATTTGTTAATCCGCTTCCTAATTTATCTGATGGAGGTTATCCAGCTGCCTTTCCATTTTTCTACATCAAACCTACTCAAAATGAAAAAGTTTTGAGAAAGTTTTTCCCCGAGGAATATGGTCCCGTAACCAAAGTCGATCCAATCGGCAACTCCCCTGTGATTATCAGGAAGGATTTGCTGGAAAAGATTGCTCCTACCTGGATGAATATTTCATTGAAGATGAAAGACGATCCCGAGGCGGATAAAGCTTTCGGATGGGTGCTAGAAATGTATGCATATGCGATTGCTTCGGCTTTGCACGGCGTGCAGCATGTTCTTCGGAAAGATTTTATGTTGCAGCCACCATGGGACATGGACATTGGTAAAAAGTTCATTATACATTATACTTATGGATGTGACTACAACTTAAAGGGGGAGTTGACTTATGGTAAAATGGGTGAATGGCGGTTCGACAAGAGGTCGCATTTACGCGGACCTCTTCCGAGAAACTTACCTTTACCCCCTCGAGGAGTTCCTGAAAGTGTGGTAACCTTGGTAAAGATGGTGAATGAAGCAACTGCAAACATTCCCAACTGGGAGGCAACATAG 1104 43.3 MVGRRNSGKASPLFLVLLALSFCFVTYNLVTAIIQYGSIGREVGDNSYDRLSNDPIIEMPENVRKGKTKAPFHVALTATDAPYSKWQCRIMYYWYKKKKNLPESEMGGFTRILHSGQPDNLMDEIPTMVVDPLPAGVDRGYVVLNRPWAFVQWLEKATIEEEYILMAEPDHIFVNPLPNLSDGGYPAAFPFFYIKPTQNEKVLRKFFPEEYGPVTKVDPIGNSPVIIRKDLLEKIAPTWMNISLKMKDDPEADKAFGWVLEMYAYAIASALHGVQHVLRKDFMLQPPWDMDIGKKFIIHYTYGCDYNLKGELTYGKMGEWRFDKRSHLRGPLPRNLPLPPRGVPESVVTLVKMVNEATANIPNWEAT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2241463 2246350 + Cp4.1LG11g03990.1 Cpe11g00405 477199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00405 367 PANTHER PUTATIVE-RELATED 6 366 - -
Cpe11g00405 367 PANTHER PEPTIDYL SERINE ALPHA-GALACTOSYLTRANSFERASE 6 366 IPR044845 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00405 K20782 HPAT; hydroxyproline O-arabinosyltransferase [EC:2.4.2.58] - csv:101220530 698.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00596 Cpe-Chr3:3584231 Cpe11g00405 Cpe-Chr11:2241463 2.16E-06 dispersed
Cpe07g00306 Cpe-Chr7:1991154 Cpe11g00405 Cpe-Chr11:2241463 1.16E-171 dispersed
Cpe11g00314 Cpe-Chr11:1694142 Cpe11g00405 Cpe-Chr11:2241463 1.67E-166 dispersed
Cpe16g00856 Cpe-Chr16:8150032 Cpe11g00405 Cpe-Chr11:2241463 0 transposed
Cpe11g00405 Cpe-Chr11:2241463 Cpe07g00103 Cpe-Chr7:532802 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g32 . . . . . . . . Cmo05g00488 . . Cma05g00431 . . Sed03g1452 . . Bhi04g00878 Tan02g2535 Cmetu03g1217 . Hepe10g0386 . Lcy13g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00405 . . . . . . . . Cla08g01202 . Cec08g1240 . Clacu08g1360 . . . Csa02g02246 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001657 2 3 2 1 2 2 3 2 2 2 2 2 3 2 2 2 2 3 3 2 2 2 2 2 2 2 2 6 4 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00405 Cpe_Chr11 FPKM 0.361323 0.426264 0.0 0.0 0.0 0.0 0.703525 0.0 0.264104 0.0