Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00408 | ATGTCCTCCGCCGATCCCCCTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA | 525 | 62.86 | MSSADPPSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2259859 | 2260383 | + | Cp4.1LG11g03980.1 | Cpe11g00408 | 477202 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00408 | 174 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 17 | 157 | - | - | |
Cpe11g00408 | 174 | SUPERFAMILY | RING/U-box | 108 | 155 | - | - | |
Cpe11g00408 | 174 | PANTHER | RING-H2 FINGER PROTEIN ATL69-RELATED | 17 | 157 | - | - | |
Cpe11g00408 | 174 | SMART | ring_2 | 109 | 150 | IPR001841 | - | |
Cpe11g00408 | 174 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 156 | IPR013083 | - | |
Cpe11g00408 | 174 | Pfam | Ring finger domain | 109 | 151 | IPR001841 | - | |
Cpe11g00408 | 174 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00321 | Cpe-Chr3:1681697 | Cpe11g00408 | Cpe-Chr11:2259859 | 2.27E-32 | dispersed | |
Cpe03g01755 | Cpe-Chr3:13279872 | Cpe11g00408 | Cpe-Chr11:2259859 | 9.65E-34 | dispersed | |
Cpe10g00317 | Cpe-Chr10:1843894 | Cpe11g00408 | Cpe-Chr11:2259859 | 3.13E-39 | dispersed | |
Cpe11g00408 | Cpe-Chr11:2259859 | Cpe14g00461 | Cpe-Chr14:2904452 | 1.24E-36 | dispersed | |
Cpe11g00408 | Cpe-Chr11:2259859 | Cpe01g00619 | Cpe-Chr1:3570770 | 1.77E-38 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00408 | - | - | cmos:111462423 | 306.219 |