Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00408 ATGTCCTCCGCCGATCCCCCTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA 525 62.86 MSSADPPSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2259859 2260383 + Cp4.1LG11g03980.1 Cpe11g00408 477202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00408 174 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 157 - -
Cpe11g00408 174 SUPERFAMILY RING/U-box 108 155 - -
Cpe11g00408 174 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 17 157 - -
Cpe11g00408 174 SMART ring_2 109 150 IPR001841 -
Cpe11g00408 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 156 IPR013083 -
Cpe11g00408 174 Pfam Ring finger domain 109 151 IPR001841 -
Cpe11g00408 174 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00321 Cpe-Chr3:1681697 Cpe11g00408 Cpe-Chr11:2259859 2.27E-32 dispersed
Cpe03g01755 Cpe-Chr3:13279872 Cpe11g00408 Cpe-Chr11:2259859 9.65E-34 dispersed
Cpe10g00317 Cpe-Chr10:1843894 Cpe11g00408 Cpe-Chr11:2259859 3.13E-39 dispersed
Cpe11g00408 Cpe-Chr11:2259859 Cpe14g00461 Cpe-Chr14:2904452 1.24E-36 dispersed
Cpe11g00408 Cpe-Chr11:2259859 Cpe01g00619 Cpe-Chr1:3570770 1.77E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00408 - - cmos:111462423 306.219