Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00425 ATGGCTGCTGCAGTATTTCACCGATCTCTTGGGACTTTTCTTACCCACGGACAAGCTAATAGTTCAAGTAATTTGTCGAAATCGAATTCGAAGTGTTTCAAGGTCGAAGTCGTGGTCTTCAGAAAGATGTCTCCTAGATCTGGCAATATGAATGTAACAGCAATTCAAGCGTCTTCTTCTCAAACTTCAATTTCTGATCCCATTTCATCACCTTCAATCAACACCACTGAAGATTCACAGAAAAAACAAAAGGAAGCAGCGTTGATCTTGATTCGGCATGGAGAATCATTGTGGAACGAAAAGAACTTGTTTACTGGCTGTGTTGATGTGCCACTGACCAAGAAAGGTGTGGAAGAGGCAATTGAAGCTGGCAAGAGAATCAGCAATATACCCGTTCCAGTTATTATTCATAACGAAACTGAGCAGGCAAGGGTCTGGAGTCAAATATTTAGTGAAGAAACCAAAAAACAATCCATCCCAGTAATAGCATCTTGGCGATTGAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAGCAGGAGACTGCTGAAAGGTACGGAAAAGAACAGGTCCATAAATGGCGCCGGAGTTACGATATTCCTCCTCCTAATGGCGAGAGTTTGGAGATGTGTGCAGAGAGAGCTGTTGCTTATTTTAAAGATCAAATTGTACCCCAGCTGCAATCTGGAAAGAATGTAATGATTTCTGCACATGGAAATTCATTGAGGAGGGGAAGTCCTGCAGGACCTTCTGAGGCAGGTGTTTATGCTTATACCAGGGACCTTGCTTCCAATGGCACTGCAACTATTAACGACGTGCTTTTGTGGCAACTCGACTGCAATGAAACAGAAGAAGTTCACATGAAATTGTAG 876 42.47 MAAAVFHRSLGTFLTHGQANSSSNLSKSNSKCFKVEVVVFRKMSPRSGNMNVTAIQASSSQTSISDPISSPSINTTEDSQKKQKEAALILIRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVPVIIHNETEQARVWSQIFSEETKKQSIPVIASWRLNERMYGELQGLNKQETAERYGKEQVHKWRRSYDIPPPNGESLEMCAERAVAYFKDQIVPQLQSGKNVMISAHGNSLRRGSPAGPSEAGVYAYTRDLASNGTATINDVLLWQLDCNETEEVHMKL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2393730 2400102 + Cp4.1LG11g04290.1 Cpe11g00425 477219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00425 291 MobiDBLite consensus disorder prediction 56 77 - -
Cpe11g00425 291 SUPERFAMILY Phosphoglycerate mutase-like 88 244 IPR029033 -
Cpe11g00425 291 Gene3D - 77 245 IPR029033 -
Cpe11g00425 291 Pfam Histidine phosphatase superfamily (branch 1) 88 244 IPR013078 -
Cpe11g00425 291 CDD HP_PGM_like 88 244 IPR013078 -
Cpe11g00425 291 MobiDBLite consensus disorder prediction 56 80 - -
Cpe11g00425 291 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 2 135 - -
Cpe11g00425 291 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 132 244 - -
Cpe11g00425 291 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 243 265 - -
Cpe11g00425 291 PANTHER PHOSPHOGLYCERATE MUTASE 2 135 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cpe11g00425 291 PANTHER PHOSPHOGLYCERATE MUTASE 132 244 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cpe11g00425 291 PANTHER PHOSPHOGLYCERATE MUTASE 243 265 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cpe11g00425 291 TIGRFAM pgm_1: phosphoglycerate mutase 1 family 87 205 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cpe11g00425 291 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 90 99 IPR001345 GO:0003824
Cpe11g00425 291 SMART PGAM_5 87 246 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00425 K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] - csv:101211372 420.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00121 Cpe11g00425 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01112 Cpe-Chr5:7504781 Cpe11g00425 Cpe-Chr11:2393730 5.49E-10 dispersed
Cpe11g00425 Cpe-Chr11:2393730 Cpe19g00775 Cpe-Chr19:5894373 1.18E-82 dispersed
Cpe11g00425 Cpe-Chr11:2393730 Cpe07g00121 Cpe-Chr7:676442 3.84E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g380 . . . . . . . . Cmo05g00508 Cmo12g00114 . . . Car12g00134 Sed04g0128 . Cpe07g00121 Bhi04g00738 Tan02g2370 Cmetu03g2087 . Hepe10g0519 . Lcy13g1581 Cla08g01093 Cam08g1546 Cec08g1120 Cco08g1247 Clacu08g1248 . Cre08g1030 . . Cone17ag1233 Cone20ag0492 . . . Cme03g01506 Blo17g00214 . . Bda13g01520 . Bpe14g00345 . Bma02g00272 . . . Cma12g00144 Cma05g00486 Car05g00433 . Cpe11g00425 . . . . . . . . . . . . . . . Lsi08g00949 . Chy03g01016 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002531 1 2 1 1 1 1 3 1 1 2 1 2 3 2 2 3 2 4 3 2 2 2 2 2 1 2 2 1 5 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00425 Cpe_Chr11 FPKM 17.043985 17.54838 0.893153 1.027545 2.017398 2.299022 1.916369 0.0 0.0 0.0