Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00427 ATGGAGCAATTTCAGAACGACGATCTTGCGTATATTGTGGATGATTATTTTGAAGTCGGTGATTTTGATGACGGTCAATTTTTCTCTGATGATGACTTCCATACTGATCAGAGTACCGAGCACATAGACTCCGACTTTGAGGACGACATCGATACAAGCACGCCGAGGACGGATACCTCTGCTTTGGATGCTAGGAATGGGAAAGATATCCAGGGAATACCTTGGGAGAGGTTCACCTTTACCAGGGAGAATTATCGGGAAAATCGTTTGAGCCAGTACAAGAACTATGAGAGCCTGCCGCCAATCTCTCGAGATGAACTGGAAAAGGAATGCTTGCGAGTGGAGAAGGGGAATAAGTTTTATGACTTCCAGTTCAATACAAGGCTTGTTAAATCAACAATCGTTCATTTTCAGCTAAGAAACCTCTTGTGGGCAACTTCTAAGCATGACGTATACCTTATGCAAAACTACTCAGTAATGCACTGGTCCTCATCGCTTCGGAGAGGCAAAGAAGTACTCAATGTAGCTAAACAAATCGTTCCCACCGTGAAACGCCCTGGAGTCTCGTCCCAGTCATTGTCCAGAGTGCAGATAAGTACAATGACAGTAAAGGAGAACTTAATCGTGGCGGGTGGTTTTCAAGGGGAACTAATTTGCAAGTACGTGAATAATCCTGGAGTTGCATTTTGCACCAAAATGACAACAGAAGAAAATGCAATTACAAATGCTGTTGATATCTTTCAAACTCCAGATGGTGCAACAAGGATTGTCGCTGCAAATAATGATGCAAAAATTAGGATTTACGATGCTAAGACATTTACTTGCCTCAACGGCTTCATGTTTCGCTGGTCTGTAAATAGCACCGCTGTTAGTCCTAATGGGAAGATGCTTGCAGTGCTTGGGGACAGTACAGAGTGTCTGCTTGCAGATGCTAACTCTGGCAAAGTGATAGAGAGCCTGAAAGGGCACTTGGATTACTCTTTTGCTTCTGCATGGCACCCTGATGGGCACATTTTGGCAACTGGTAACCAAGATACCACCTGCAGGCTGTGGGACATAAGGAATACGTCCAAGTCTCTAGCTGTGCTCAAGGGAAGAATGGGATCAATCAGATGTGTAAAATTCAGCTCCGATGGCAAATTCCTGTCGACTGCAGAGCCTGCAGATTTCGTCCACATCTATGAAAGTCGCACAGGTTATGAACAAGCACAAGAAATTGATCTGTTTGGGGAAATTGCTGGAATATCCTTCAGTCCCGACACGGAAGCTCTGTTTGTTGGCATCGCTGATCGAATATACGGTAGCGTATTAGAGTTCAACAAACGACATCATAACAAGTACATAGATTCCATGTTCTAG 1359 44.08 MEQFQNDDLAYIVDDYFEVGDFDDGQFFSDDDFHTDQSTEHIDSDFEDDIDTSTPRTDTSALDARNGKDIQGIPWERFTFTRENYRENRLSQYKNYESLPPISRDELEKECLRVEKGNKFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSSLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISTMTVKENLIVAGGFQGELICKYVNNPGVAFCTKMTTEENAITNAVDIFQTPDGATRIVAANNDAKIRIYDAKTFTCLNGFMFRWSVNSTAVSPNGKMLAVLGDSTECLLADANSGKVIESLKGHLDYSFASAWHPDGHILATGNQDTTCRLWDIRNTSKSLAVLKGRMGSIRCVKFSSDGKFLSTAEPADFVHIYESRTGYEQAQEIDLFGEIAGISFSPDTEALFVGIADRIYGSVLEFNKRHHNKYIDSMF 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2410602 2417537 + Cp4.1LG11g04320.1 Cpe11g00427 477221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00427 452 SMART WD40_4 356 395 IPR001680 GO:0005515
Cpe11g00427 452 SMART WD40_4 313 352 IPR001680 GO:0005515
Cpe11g00427 452 SMART WD40_4 233 269 IPR001680 GO:0005515
Cpe11g00427 452 SMART WD40_4 272 310 IPR001680 GO:0005515
Cpe11g00427 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 355 - -
Cpe11g00427 452 SUPERFAMILY WD40 repeat-like 204 440 IPR036322 GO:0005515
Cpe11g00427 452 PANTHER OS03G0386000 PROTEIN 1 452 - -
Cpe11g00427 452 Pfam WD domain, G-beta repeat 315 352 IPR001680 GO:0005515
Cpe11g00427 452 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Cpe11g00427 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 361 IPR001680 GO:0005515
Cpe11g00427 452 Gene3D - 224 448 IPR015943 GO:0005515
Cpe11g00427 452 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 452 - -
Cpe11g00427 452 MobiDBLite consensus disorder prediction 38 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00427 - - - csv:101222353 819.305
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00123 Cpe11g00427 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00529 Cpe-Chr2:3139417 Cpe11g00427 Cpe-Chr11:2410602 0 dispersed
Cpe06g00512 Cpe-Chr6:3053198 Cpe11g00427 Cpe-Chr11:2410602 0 dispersed
Cpe08g00844 Cpe-Chr8:6692993 Cpe11g00427 Cpe-Chr11:2410602 0 dispersed
Cpe11g00427 Cpe-Chr11:2410602 Cpe14g00774 Cpe-Chr14:6096867 3.36E-175 dispersed
Cpe11g00427 Cpe-Chr11:2410602 Cpe07g00123 Cpe-Chr7:693796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00427 Cpe_Chr11 FPKM 0.0 0.0 0.809233 0.970245 0.0 0.0 0.0 0.403111 0.0 0.205674