Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00454 ATGAGGGAGAGAATTGTCTGGCTTAAGCGTTACGAGCTAAAGGTCGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGAAACCAAGGGGCGGAGACGTCGCAATTGGACGGCGAAGATGGAGAGTTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTACAGCAATCGATCATCAACTCAATCACGGTTTGCAAATACAAAAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAACTGCTCCGGCTGTTGCCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACATGGCTGAGGACTCATACCACTTGCCCACTCTGTCGAGCCCATATTCTTACTGATTTTCCAACCTCCAACACCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGTCGTAATTGAGGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTCTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTGATGAACAGAGAGACATTGGGGTTCCTCCGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAAATGAAACAATGATGAACTGTTCTTCTGCAACATGA 687 47.31 MRERIVWLKRYELKVVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIGVPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2562752 2564606 + Cp4.1LG11g04460.1 Cpe11g00454 477248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00454 228 SUPERFAMILY RING/U-box 78 136 - -
Cpe11g00454 228 CDD RING-H2_PA-TM-RING 84 127 - -
Cpe11g00454 228 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 213 IPR044675 -
Cpe11g00454 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 133 IPR013083 -
Cpe11g00454 228 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Cpe11g00454 228 Pfam Ring finger domain 84 127 IPR001841 -
Cpe11g00454 228 SMART ring_2 85 126 IPR001841 -
Cpe11g00454 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00454 Cpe-Chr11:2562752 Cpe15g00207 Cpe-Chr15:1711316 1.09E-38 dispersed
Cpe17g00010 Cpe-Chr17:75337 Cpe11g00454 Cpe-Chr11:2562752 8.43E-06 dispersed
Cpe11g00454 Cpe-Chr11:2562752 Cpe15g00366 Cpe-Chr15:4874155 7.33E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00454 - - csv:101209492 315.079