Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00455 ATGGCGTTGGAAGCGGTGGTTTTCCCACAAGATCCATTTACTTATGTTTGCAGGGATGTCTGTTCTCACGGCGGAGGAGGAGCTTGGGCTGGCTATGATCATGGCTTCCAATTAGAACAACAAAAACCCTTTCTTGAAGTGCCTGAAACTCAAACAGAGGACACAAAATTCGCCGCGAATTGGGAGGCTTCACCGGAGGAATGTTCGATTAATCAGCCTATTCCCGGAGGAGCTCTCTACACGCCGCCGTCTACCGGAAGAAGAAAGCGACGGAGGACACGGAGCACAAAAAACAGAGAGGAAATTGAAAACCAGAGGATGACACATATCGCGGTGGAGCGCAACCGTCGGAAACAAATGAATGAGTATCTAGCGATTCTCCGATCATTAATGCCGTCGTCTTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGCGCCATTAATTTCGTCAAGGAATTAGAGCAACAACTGCAGTTCATCAACACCCATAAGAACACAATCGAAAATGGCGGTTCCCCTTTTGCTGAATTCTTTTCCTTCCCTCAATACTCAACGAAGAACACGGCTCATGACTCATCCATTACTCATACCCAGTGGCCGGCCGGTGATATTGAAGTCACCATGATTGATACCCATGCCAACCTTAAAATACTGTCGCCAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTCACTGTTCTTCATCTCAATGTCACTACTTCAGATCAAATGGTTCTTTATTCTCTAAGCATTAAGGTTGAAGAAGGGTGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTTGAAGAAGGGTGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTTGAAGAAGGGTGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTGCTGGATGTCTGTTCTCACGGCGGAGGAGGAGCTTGGGCTGGCTATGATCATGGCTTCCAATTAGAACAACAAAAACCCTTTCTTGAAGTGCCTGAAACTCAAACAGAGGACACAAAATTCGCCGCGAATTGGGAGGCTTCACCGGAGGAATGTTCGATTAATCAGCCTATTCCCGGAGGAGCTCTCTACACGCCGCCGTCTACCGGAAGAAGAAAGCGACGGAGGACACGGAGCACAAAAAACAGAGAGGAAATTGAAAACCAGAGGATGACACATATCGCGGTGGAGCGCAACCGTCGGAAACAAATGAATGAGTATCTAGCGATTCTCCGATCATTAATGCCGTCGTCTTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGCGCCATTAATTTCGTCAAGGAATTAGAGCAACAACTGCAGTTCATCAACACCCATAAGAACACAATCGAAAATGGCGGTTCCCCTTTTGCTGAATTCTTTTCCTTCCCTCAATACTCAACGAAGAACACGGCTCATGACTCATCCATTACTCATACCCAGTGGCCGGCCGGTGATATTGAAGTCACCATGATTGATACCCATGCCAACCTTAAAATACTGTCGCCAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTCACTGTTCTTCATCTCAATGTCACTACTTCAGATCAAATGGTTCTTTATTCTCTAAGCATTAAGGTTGAAGAAGGGTGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTGCTGTTTATTCAAGAGGAAGCTGCTTTAAAT 1767 45.9 MALEAVVFPQDPFTYVCRDVCSHGGGGAWAGYDHGFQLEQQKPFLEVPETQTEDTKFAANWEASPEECSINQPIPGGALYTPPSTGRRKRRRTRSTKNREEIENQRMTHIAVERNRRKQMNEYLAILRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFINTHKNTIENGGSPFAEFFSFPQYSTKNTAHDSSITHTQWPAGDIEVTMIDTHANLKILSPKRPRQLLKMVAGFQSLRLTVLHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVEEGCQLNTVDEIAAAVEEGCQLNTVDEIAAAVNQILLDVCSHGGGGAWAGYDHGFQLEQQKPFLEVPETQTEDTKFAANWEASPEECSINQPIPGGALYTPPSTGRRKRRRTRSTKNREEIENQRMTHIAVERNRRKQMNEYLAILRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFINTHKNTIENGGSPFAEFFSFPQYSTKNTAHDSSITHTQWPAGDIEVTMIDTHANLKILSPKRPRQLLKMVAGFQSLRLTVLHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLFIQEEAALN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2566773 2570500 - Cp4.1LG11g04530.1 Cpe11g00455 477249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00455 589 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Cpe11g00455 589 Pfam Helix-loop-helix DNA-binding domain 402 453 IPR011598 GO:0046983
Cpe11g00455 589 PANTHER MAX DIMERIZATION, MAD 1 280 - -
Cpe11g00455 589 MobiDBLite consensus disorder prediction 72 101 - -
Cpe11g00455 589 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 469 IPR036638 GO:0046983
Cpe11g00455 589 MobiDBLite consensus disorder prediction 369 398 - -
Cpe11g00455 589 Gene3D - 97 167 IPR036638 GO:0046983
Cpe11g00455 589 Gene3D - 394 464 IPR036638 GO:0046983
Cpe11g00455 589 SMART finulus 407 458 IPR011598 GO:0046983
Cpe11g00455 589 SMART finulus 110 161 IPR011598 GO:0046983
Cpe11g00455 589 PANTHER MAX DIMERIZATION, MAD 375 589 - -
Cpe11g00455 589 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 172 IPR036638 GO:0046983
Cpe11g00455 589 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Cpe11g00455 589 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 401 452 IPR011598 GO:0046983
Cpe11g00455 589 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 280 - -
Cpe11g00455 589 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 375 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00455 - - - csv:101218813 417.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00770 Cpe-Chr1:4499075 Cpe11g00455 Cpe-Chr11:2566773 2.98E-53 dispersed
Cpe07g00915 Cpe-Chr7:8207044 Cpe11g00455 Cpe-Chr11:2566773 4.88E-52 dispersed
Cpe11g00455 Cpe-Chr11:2566773 Cpe11g00947 Cpe-Chr11:8017880 7.86E-83 dispersed
Cpe03g01841 Cpe-Chr3:13743147 Cpe11g00455 Cpe-Chr11:2566773 3.23E-52 transposed
Cpe08g00665 Cpe-Chr8:4574104 Cpe11g00455 Cpe-Chr11:2566773 2.21E-52 transposed
Cpe11g00455 Cpe-Chr11:2566773 Cpe07g00192 Cpe-Chr7:1197560 6.56E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g459 . . . . . . . . Cmo05g00543 . . . . . Sed08g1674 . . Bhi04g00791 Tan02g2427 Cmetu03g0550 . Hepe10g0469 . Lcy13g1533 Cla08g01134 Cam08g1591 Cec08g1161 Cco08g1287 Clacu08g1291 . Cre08g1073 Cone4ag1316 Cone7ag1260 Cone17ag1201 Cone20ag0528 . . . Cme03g01839 . . . . . . . . . . . . Cma05g00515 Car05g00466 . Cpe11g00455 . . . . . . . . . . . . . . . Lsi08g00990 Csa02g02175 Chy03g01342 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010750 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50232 PF00010 HLH 6.90E-10 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00455 Cpe_Chr11 FPKM 17.220213 19.775326 37.592842 37.867054 86.198341 83.874664 87.563278 48.079094 48.736198 48.900536