Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00458 ATGGAGGCCCATGTGAAGGCGGATGCGGCGGCGGATCTTAACCAGGCGTTGATTGGAAGGGATGAAGATCGACCTCGTCGGTCGGAGGAGGTATGGTCGAAGTTATGGGTTGAAACCCAGAAGCTATGGCTAATTGTTGGCCCGACTATTTTCGCCCGTGTTGCGACTTTCTCTATGAACATTATAACCCAAGCGTTTGCGGGTCATCTTGGTGATGTTGAACTGGCTTCCATTTCGATTGCTAATACTGTTATTGTTGGGTTCAATTTTGGGCTATTGTTGGGTATGGCGAGTGCATTGGAGACGTTATGTGGGCAAGCGTATGGAGCTAAGAGGTTTCATATGTTGGGGATTTACTTGCAGCGGTCATGGATAATGCTGTTCTTGTGTTGCTTTTTGTTATTACCCTTTTATGTTTATGCTACTCCGGTTCTGAAGATGCTGGGACAGGCGGATGATGTGGCGGAGCTATCTGGGGTGGTGGCGATTTGGTTAATACCACTTCATTTTAGCTTTGCGTTTCAGTTTCCATTGCAGGTGTTCTTGCAGTGCCAGCATAAGACACTTGTGATTGCTTGGGTGTCTTTGGTGGGGTTGGTGGTGAATGTTGTCACTAGTTGGCTATTCATTTATGAGTTGCAGCTTGGTGTCATTGGGGCTGCTATTGCTCTTGATATTTCTTGGTGGGTTTTGGGTTTGGGGTTGTATTTCTATACTGTTGGGGGTTGGTGTCCTTTGACATGGACTGGATTCTCTGTTAAAGCTTTTCATGGCCTTTGGGAGTTTCTTAAACTCTCCATTGCTGCTGGCCTCATGCTCTGCATGAGCATCAATGGGTGGGAAATGATGATCCCTGTAGCCTTCTTAGCTGGTGTCGGAGTAAGAGTAGCAAACGAGCTAGGAGCTGGCAACGGGAAAGCAGCCAAATTTGCAACAATCGTCTCAGTGGCACAGTCAACAGTGATTGGAATAGCAATATGTCTTGTCATAGTCCTATTTCATGGCAAGATAGCACTGATCTTCTCAAGCAGCACAGACGTAGTGGAAGCAGTGGATTCCCTCTCCAATCTGCTAGCCATTACCATCCTCTTAAACAGCATCCAACCAGTTCTTTCAGGCGTGGCTGTTGGATCAGGCTGGCAAGCTTGGGTAGCATACATAAACCTTGGATGCTATTATGGTATAGGTCTCCCACTTGGTTTCATCATGCAATGGTATTACAAATCGGGCGTATCGGGCATTTGGGGAGGGATGTTGTTTGGAGGAAGTGCGTTTCAAACTCTGATATTGATCATCATAACAATTAGAACAGACTGGGAAAAAGAGGCTGAGAATGCATTGAAGCACGTAGAGGAGTGGTCGACACCTCAGGACAATGAGAAGCTTCTTCTGGCGTAA 1398 46.57 MEAHVKADAAADLNQALIGRDEDRPRRSEEVWSKLWVETQKLWLIVGPTIFARVATFSMNIITQAFAGHLGDVELASISIANTVIVGFNFGLLLGMASALETLCGQAYGAKRFHMLGIYLQRSWIMLFLCCFLLLPFYVYATPVLKMLGQADDVAELSGVVAIWLIPLHFSFAFQFPLQVFLQCQHKTLVIAWVSLVGLVVNVVTSWLFIYELQLGVIGAAIALDISWWVLGLGLYFYTVGGWCPLTWTGFSVKAFHGLWEFLKLSIAAGLMLCMSINGWEMMIPVAFLAGVGVRVANELGAGNGKAAKFATIVSVAQSTVIGIAICLVIVLFHGKIALIFSSSTDVVEAVDSLSNLLAITILLNSIQPVLSGVAVGSGWQAWVAYINLGCYYGIGLPLGFIMQWYYKSGVSGIWGGMLFGGSAFQTLILIIITIRTDWEKEAENALKHVEEWSTPQDNEKLLLA 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2582256 2585297 - Cp4.1LG11g04550.1 Cpe11g00458 477252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00458 465 Pfam MatE 48 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe11g00458 465 Pfam MatE 269 402 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe11g00458 465 PANTHER PROTEIN DETOXIFICATION 273 451 - -
Cpe11g00458 465 PANTHER PROTEIN DETOXIFICATION 23 275 - -
Cpe11g00458 465 CDD MATE_eukaryotic 38 445 IPR045069 GO:0042910|GO:1990961
Cpe11g00458 465 PANTHER MULTIDRUG RESISTANCE PROTEIN 273 451 - -
Cpe11g00458 465 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00458 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101218581 674.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00458 Cpe-Chr11:2582256 Cpe14g00625 Cpe-Chr14:3985423 4.77E-163 dispersed
Cpe10g00544 Cpe-Chr10:3205208 Cpe11g00458 Cpe-Chr11:2582256 2.99E-156 wgd
Cpe11g00458 Cpe-Chr11:2582256 Cpe07g00190 Cpe-Chr7:1181929 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00458 Cpe_Chr11 FPKM 21.251177 25.516893 39.981819 40.89323 37.736515 39.681065 34.711239 56.539433 56.723564 54.476345