Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00462 ATGAACTCGAACGACAGAAACGAAAGAAATTCGCCGGTCGCCGGCAAAGTACGGTGTTCCGTGCTCCCACAGACCGGGCCTCTGGAGGTTTATTGGGTTATTTTATGTTATGATCGCTCGGGCAATATTTATACCTTCGGTTTTTTTGGACCCACAAAAGGGCAGACCATTGTATACCTTTGTGCCAATGCGCACACAAAGCAATCGATGACTCGGTGGCTCGGCGCTTCAGAGGTCGCCGCTCGAACGAACTCGGTGATGAAGACGACTCTCCGCTCCGGCACCGGACGAATTCATTTTCTTCTCCGAGCATGGAGGCCTATATCGTCACATACTTCGCCAGTCGACTCTTCGGACATCATTTCTGCCGTATCTCCCAAAACCCTACAAAAAGGTGGCGACAATGGCAACTTCAAGCAGGACTTTATGAAGCTCAAGTCACCTCGGAGTAGCGTGACCACCGTACTTCAGAGTGGTAACTGTGAAGCTCAAAGAACCTCAATCACTAAGCTCCGGCGTGTTGTCAAGAAGCTCTGCAAATCGAAGCGCTTTGAGCGTGCGCTAGAGGTACTAATGTTGATGGAAACTCAAAATAAGATCCGTATGTCCCCGGCTGATCATGCTCTCCGATTGGAATTGACCATCAAACTGCACGGTTTGCTGAAAGCTGAAGAACTCTTCAATCAATTGCCCAACATAGCCTCTCAGAAAGCTTCATCTCTCCTTCTTCTTCATGGTTATGTCAAAGAGAAGAACACAGAGAAAGCTGAGGCTTTCATGGCGAAGCTAAAGGGCTTGGGACTGGTTGTGGATCCGCATCTTTACAATGAGATGATGAAACTGTATGTCGCCACATCTCAAAATGAGAAAGTTCCTCTTGTCATAAAGGACATGAAGCAAAATCACATACTGAGAAATGTTCTCTCCTACAATCTTTGGATGAATGCTTGCAGTGAGCTATATGGGGTTAGGTCAGTGGAATTGGTGTATGAAGAAATGCTGAGTGATAAGAATGTTCAAGTGGGATGGAGCACTCTGTCTACCCTGGCTAAAGTGTATACACAGGCAGGCCTTGTTCACAAAGCGTTTGCAGCCTTGAAAGCTGCAGAGAAGAAGCTATCCTCAGGTAACAGGCTTGGATATTTCTTCTTAATTACATTATATGCCACTTTGAACGATAAGGAGGGAGTTCTTCGAGTTTGGACAGCTAGTAAAGCTGTAAGTGACAGACCCACTTGTGCCAACTACATGTGTATATTGCTATGTTTGGTGAAGCTAGGAGATATCCATGAGGCAGAGAAAATATTTCAGGAATGGGAGCTCGATTGTCGTAATTATGACATTAGAGTCTCCAACGTTCTTCTGGGCGCATATGTGAGGAATGGATTGTTAGAGAAGGCCGAGTCGTTACATATGCACACATTAGAGAGAGGTGGTACTCCAAATTATAAGACATGGGAGATTCTCATGGAGGGATGTGTGAGAAGCCAAAACTTGGACAGAGGTATTAATTTTCTCAAGAACGATTTTGCTGGGTTGAAATGTCATGATTAA 1554 45.37 MNSNDRNERNSPVAGKVRCSVLPQTGPLEVYWVILCYDRSGNIYTFGFFGPTKGQTIVYLCANAHTKQSMTRWLGASEVAARTNSVMKTTLRSGTGRIHFLLRAWRPISSHTSPVDSSDIISAVSPKTLQKGGDNGNFKQDFMKLKSPRSSVTTVLQSGNCEAQRTSITKLRRVVKKLCKSKRFERALEVLMLMETQNKIRMSPADHALRLELTIKLHGLLKAEELFNQLPNIASQKASSLLLLHGYVKEKNTEKAEAFMAKLKGLGLVVDPHLYNEMMKLYVATSQNEKVPLVIKDMKQNHILRNVLSYNLWMNACSELYGVRSVELVYEEMLSDKNVQVGWSTLSTLAKVYTQAGLVHKAFAALKAAEKKLSSGNRLGYFFLITLYATLNDKEGVLRVWTASKAVSDRPTCANYMCILLCLVKLGDIHEAEKIFQEWELDCRNYDIRVSNVLLGAYVRNGLLEKAESLHMHTLERGGTPNYKTWEILMEGCVRSQNLDRGINFLKNDFAGLKCHD 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2606125 2608035 + Cp4.1LG11g04610.1 Cpe11g00462 477256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00462 517 PANTHER OS02G0796400 PROTEIN 111 515 - -
Cpe11g00462 517 Pfam PPR repeat 452 473 IPR002885 -
Cpe11g00462 517 Pfam PPR repeat 416 439 IPR002885 -
Cpe11g00462 517 Pfam Pentatricopeptide repeat domain 263 317 IPR002885 -
Cpe11g00462 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Cpe11g00462 517 PANTHER OS12G0527900 PROTEIN 111 515 - -
Cpe11g00462 517 Gene3D Tetratricopeptide repeat domain 167 377 IPR011990 GO:0005515
Cpe11g00462 517 Gene3D Tetratricopeptide repeat domain 378 511 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00462 - - - bhj:120075607 712.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00462 Cpe-Chr11:2606125 Cpe17g00845 Cpe-Chr17:6559711 1.12E-70 dispersed
Cpe11g00462 Cpe-Chr11:2606125 Cpe15g00367 Cpe-Chr15:4876618 1.06E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g471 . . . . . . . . Cmo05g00550 . . . . . Sed04g0176 . . Bhi04g00800 Tan02g2436 Cmetu03g0383 . Hepe10g0460 . Lcy13g1510 Cla08g01140 Cam08g1599 Cec08g1170 Cco08g1297 Clacu08g1299 . Cre08g1082 . . Cone17ag1195 . . . . Cme03g01832 . . . Bda13g01373 . Bpe14g00471 . . . . . . Cma05g00521 Car05g00472 . Cpe11g00462 . . . . . . . . . . . . . . . Lsi08g00998 Csa02g02182 Chy03g01335 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012851 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00462 Cpe_Chr11 FPKM 6.222222 6.207241 8.551322 10.928842 11.015675 9.205656 12.017518 11.580738 10.476187 11.312475