Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00465 | ATGGATTTGGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACACCGCCGCCGCCCGGGGAGGGTTCATCGGCGGCGAGGAAAACCGGAGGCGGCGGAGGAGGAATAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTTTACCGGCGGGAGAAGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACACCAACATCATCAATTTTCTTATCGTGGGCCCCCACACCCTTCTGCTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCAGGGAGAGAGGAGGAGGATAACACATCTAATCCGAGCAGTAGCGGCGGCGGAACTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGGACCACCGGTGTCCGGCGGCAGGTGCTCAAGGTTTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG | 723 | 52.14 | MDLDEEHDDQDDEVIEEMPIAHHFDATPPPPGEGSSAARKTGGGGGGIGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSAYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGTGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2623784 | 2624506 | - | Cp4.1LG11g04690.1 | Cpe11g00465 | 477259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00465 | 240 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 55 | 104 | IPR006456 | - | |
Cpe11g00465 | 240 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cpe11g00465 | 240 | MobiDBLite | consensus disorder prediction | 155 | 169 | - | - | |
Cpe11g00465 | 240 | Pfam | ZF-HD protein dimerisation region | 53 | 105 | IPR006456 | - | |
Cpe11g00465 | 240 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cpe11g00465 | 240 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 54 | 104 | IPR006456 | - | |
Cpe11g00465 | 240 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 174 | 230 | IPR006455 | - | |
Cpe11g00465 | 240 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 50 | 236 | - | - | |
Cpe11g00465 | 240 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 50 | 236 | - | - | |
Cpe11g00465 | 240 | Gene3D | - | 158 | 235 | - | - | |
Cpe11g00465 | 240 | SUPERFAMILY | Homeodomain-like | 160 | 235 | IPR009057 | - | |
Cpe11g00465 | 240 | MobiDBLite | consensus disorder prediction | 147 | 173 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g00178 | Cpe-Chr9:1036932 | Cpe11g00465 | Cpe-Chr11:2623784 | 2.88E-46 | dispersed | |
Cpe10g00617 | Cpe-Chr10:3583021 | Cpe11g00465 | Cpe-Chr11:2623784 | 2.62E-58 | dispersed | |
Cpe11g00204 | Cpe-Chr11:1107091 | Cpe11g00465 | Cpe-Chr11:2623784 | 6.95E-57 | dispersed | |
Cpe14g00529 | Cpe-Chr14:3339623 | Cpe11g00465 | Cpe-Chr11:2623784 | 2.12E-25 | dispersed | |
Cpe19g00812 | Cpe-Chr19:6085016 | Cpe11g00465 | Cpe-Chr11:2623784 | 2.69E-54 | dispersed | |
Cpe20g00171 | Cpe-Chr20:975897 | Cpe11g00465 | Cpe-Chr11:2623784 | 2.79E-41 | dispersed | |
Cpe10g00542 | Cpe-Chr10:3189658 | Cpe11g00465 | Cpe-Chr11:2623784 | 2.09E-73 | wgd | |
Cpe11g00465 | Cpe-Chr11:2623784 | Cpe19g00746 | Cpe-Chr19:5752708 | 3.70E-66 | wgd | |
Cpe11g00465 | Cpe-Chr11:2623784 | Cpe07g00186 | Cpe-Chr7:1166653 | 9.46E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50233 | PF04770 | ZF-HD_dimer | 2.50E-29 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00465 | - | - | csv:101216697 | 344.354 |