Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00465 ATGGATTTGGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACACCGCCGCCGCCCGGGGAGGGTTCATCGGCGGCGAGGAAAACCGGAGGCGGCGGAGGAGGAATAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTTTACCGGCGGGAGAAGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACACCAACATCATCAATTTTCTTATCGTGGGCCCCCACACCCTTCTGCTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCAGGGAGAGAGGAGGAGGATAACACATCTAATCCGAGCAGTAGCGGCGGCGGAACTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGGACCACCGGTGTCCGGCGGCAGGTGCTCAAGGTTTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG 723 52.14 MDLDEEHDDQDDEVIEEMPIAHHFDATPPPPGEGSSAARKTGGGGGGIGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSAYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGTGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2623784 2624506 - Cp4.1LG11g04690.1 Cpe11g00465 477259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00465 240 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Cpe11g00465 240 MobiDBLite consensus disorder prediction 1 46 - -
Cpe11g00465 240 MobiDBLite consensus disorder prediction 155 169 - -
Cpe11g00465 240 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Cpe11g00465 240 MobiDBLite consensus disorder prediction 1 15 - -
Cpe11g00465 240 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
Cpe11g00465 240 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 174 230 IPR006455 -
Cpe11g00465 240 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 50 236 - -
Cpe11g00465 240 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 236 - -
Cpe11g00465 240 Gene3D - 158 235 - -
Cpe11g00465 240 SUPERFAMILY Homeodomain-like 160 235 IPR009057 -
Cpe11g00465 240 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00178 Cpe-Chr9:1036932 Cpe11g00465 Cpe-Chr11:2623784 2.88E-46 dispersed
Cpe10g00617 Cpe-Chr10:3583021 Cpe11g00465 Cpe-Chr11:2623784 2.62E-58 dispersed
Cpe11g00204 Cpe-Chr11:1107091 Cpe11g00465 Cpe-Chr11:2623784 6.95E-57 dispersed
Cpe14g00529 Cpe-Chr14:3339623 Cpe11g00465 Cpe-Chr11:2623784 2.12E-25 dispersed
Cpe19g00812 Cpe-Chr19:6085016 Cpe11g00465 Cpe-Chr11:2623784 2.69E-54 dispersed
Cpe20g00171 Cpe-Chr20:975897 Cpe11g00465 Cpe-Chr11:2623784 2.79E-41 dispersed
Cpe10g00542 Cpe-Chr10:3189658 Cpe11g00465 Cpe-Chr11:2623784 2.09E-73 wgd
Cpe11g00465 Cpe-Chr11:2623784 Cpe19g00746 Cpe-Chr19:5752708 3.70E-66 wgd
Cpe11g00465 Cpe-Chr11:2623784 Cpe07g00186 Cpe-Chr7:1166653 9.46E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50233 PF04770 ZF-HD_dimer 2.50E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00465 - - csv:101216697 344.354