Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00472 ATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCGGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCGCTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGCGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGATTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGACCATCTGGGCCTAGATCACTTTGTAACGCTTGTGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGGGCTTCCTTTCTGGTGCAATTAGGGCTTTTGACAAACTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGATGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTCGAGGGCGAAGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCTGTTCTCTTACTTCTTGGAGGATGTGATGTACCAACCGGTGTGCCTACAATGGATGTACCATACGATGATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGTTTGCGAAAATGTCAACATTGTGGTGTTAGCGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCCATGCAAATTGCCAATCATTCAACAAATGGCGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1770 49.1 MYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQGFLSGAIRAFDKLMAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGDVMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGCDVPTGVPTMDVPYDDNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQSLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSLDPVEEDINETTVELTNSLPMQIANHSTNGDEQEPLIELANPSDTDIDIPTNFD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2698630 2715290 - Cp4.1LG11g04800.1 Cpe11g00472 477266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00472 589 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Pfam GATA zinc finger 441 477 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 ProSiteProfiles CCT domain profile. 406 448 IPR010402 GO:0005515
Cpe11g00472 589 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Cpe11g00472 589 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 MobiDBLite consensus disorder prediction 525 539 - -
Cpe11g00472 589 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 MobiDBLite consensus disorder prediction 1 21 - -
Cpe11g00472 589 MobiDBLite consensus disorder prediction 171 203 - -
Cpe11g00472 589 ProSiteProfiles GATA-type zinc finger domain profile. 205 259 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 SMART GATA_3 435 488 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Gene3D - 202 252 IPR013088 GO:0006355|GO:0008270
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 63 257 - -
Cpe11g00472 589 Pfam tify domain 341 372 IPR010399 -
Cpe11g00472 589 Pfam tify domain 73 105 IPR010399 -
Cpe11g00472 589 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cpe11g00472 589 ProSitePatterns GATA-type zinc finger domain. 441 468 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 ProSiteProfiles GATA-type zinc finger domain profile. 435 483 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cpe11g00472 589 Pfam CCT motif 406 437 IPR010402 GO:0005515
Cpe11g00472 589 SMART tify_2 71 106 IPR010399 -
Cpe11g00472 589 SMART tify_2 338 373 IPR010399 -
Cpe11g00472 589 MobiDBLite consensus disorder prediction 187 201 - -
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28 63 257 IPR045280 GO:0006355
Cpe11g00472 589 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 439 485 - -
Cpe11g00472 589 ProSiteProfiles Tify domain profile. 338 373 IPR010399 -
Cpe11g00472 589 CDD ZnF_GATA 440 484 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Gene3D - 431 491 IPR013088 GO:0006355|GO:0008270
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28 274 437 IPR045280 GO:0006355
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28 437 589 IPR045280 GO:0006355
Cpe11g00472 589 MobiDBLite consensus disorder prediction 558 589 - -
Cpe11g00472 589 MobiDBLite consensus disorder prediction 511 539 - -
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 274 437 - -
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 437 589 - -
Cpe11g00472 589 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cpe11g00472 589 MobiDBLite consensus disorder prediction 171 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00472 - - - csv:101214596 543.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00363 Cpe-Chr4:4272010 Cpe11g00472 Cpe-Chr11:2698630 1.67E-52 dispersed
Cpe11g00472 Cpe-Chr11:2698630 Cpe12g00537 Cpe-Chr12:5509944 2.40E-47 dispersed
Cpe11g00472 Cpe-Chr11:2698630 Cpe15g00382 Cpe-Chr15:5041268 1.30E-43 wgd
Cpe11g00472 Cpe-Chr11:2698630 Cpe07g00176 Cpe-Chr7:1051500 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe12g00176 CST 1 180 Tify Gene Family AT4G14713 52.6 4.0e-45 178.7
Cpe17g00164 CST 1 180 Tify Gene Family AT4G14713 51.6 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50234 PF06203 CCT 8.60E-15 CL0281 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00472 Cpe_Chr11 FPKM 9.002891 10.906363 14.874072 14.040647 10.163795 10.808563 11.29724 25.656179 24.362375 25.198458