Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00472 ATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCGGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCGCTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGCGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGATTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGACCATCTGGGCCTAGATCACTTTGTAACGCTTGTGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGGGCTTCCTTTCTGGTGCAATTAGGGCTTTTGACAAACTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGATGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTCGAGGGCGAAGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCTGTTCTCTTACTTCTTGGAGGATGTGATGTACCAACCGGTGTGCCTACAATGGATGTACCATACGATGATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGTTTGCGAAAATGTCAACATTGTGGTGTTAGCGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCCATGCAAATTGCCAATCATTCAACAAATGGCGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1770 49.1 MYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQGFLSGAIRAFDKLMAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGDVMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGCDVPTGVPTMDVPYDDNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQSLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSLDPVEEDINETTVELTNSLPMQIANHSTNGDEQEPLIELANPSDTDIDIPTNFD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2698630 2715290 - Cp4.1LG11g04800.1 Cpe11g00472 477266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00472 589 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Pfam GATA zinc finger 441 477 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 ProSiteProfiles CCT domain profile. 406 448 IPR010402 GO:0005515
Cpe11g00472 589 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Cpe11g00472 589 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 MobiDBLite consensus disorder prediction 525 539 - -
Cpe11g00472 589 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 MobiDBLite consensus disorder prediction 1 21 - -
Cpe11g00472 589 MobiDBLite consensus disorder prediction 171 203 - -
Cpe11g00472 589 ProSiteProfiles GATA-type zinc finger domain profile. 205 259 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 SMART GATA_3 435 488 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Gene3D - 202 252 IPR013088 GO:0006355|GO:0008270
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 63 257 - -
Cpe11g00472 589 Pfam tify domain 341 372 IPR010399 -
Cpe11g00472 589 Pfam tify domain 73 105 IPR010399 -
Cpe11g00472 589 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cpe11g00472 589 ProSitePatterns GATA-type zinc finger domain. 441 468 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 ProSiteProfiles GATA-type zinc finger domain profile. 435 483 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cpe11g00472 589 Pfam CCT motif 406 437 IPR010402 GO:0005515
Cpe11g00472 589 SMART tify_2 71 106 IPR010399 -
Cpe11g00472 589 SMART tify_2 338 373 IPR010399 -
Cpe11g00472 589 MobiDBLite consensus disorder prediction 187 201 - -
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28 63 257 IPR045280 GO:0006355
Cpe11g00472 589 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 439 485 - -
Cpe11g00472 589 ProSiteProfiles Tify domain profile. 338 373 IPR010399 -
Cpe11g00472 589 CDD ZnF_GATA 440 484 IPR000679 GO:0006355|GO:0043565
Cpe11g00472 589 Gene3D - 431 491 IPR013088 GO:0006355|GO:0008270
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28 274 437 IPR045280 GO:0006355
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28 437 589 IPR045280 GO:0006355
Cpe11g00472 589 MobiDBLite consensus disorder prediction 558 589 - -
Cpe11g00472 589 MobiDBLite consensus disorder prediction 511 539 - -
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 274 437 - -
Cpe11g00472 589 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 437 589 - -
Cpe11g00472 589 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cpe11g00472 589 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00363 Cpe-Chr4:4272010 Cpe11g00472 Cpe-Chr11:2698630 1.67E-52 dispersed
Cpe11g00472 Cpe-Chr11:2698630 Cpe12g00537 Cpe-Chr12:5509944 2.40E-47 dispersed
Cpe11g00472 Cpe-Chr11:2698630 Cpe15g00382 Cpe-Chr15:5041268 1.30E-43 wgd
Cpe11g00472 Cpe-Chr11:2698630 Cpe07g00176 Cpe-Chr7:1051500 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50234 PF06203 CCT 8.60E-15 CL0281 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00472 - - csv:101214596 543.117