Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00472 | ATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCGGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCGCTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGCGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGATTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGACCATCTGGGCCTAGATCACTTTGTAACGCTTGTGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGGGCTTCCTTTCTGGTGCAATTAGGGCTTTTGACAAACTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGATGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTCGAGGGCGAAGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCTGTTCTCTTACTTCTTGGAGGATGTGATGTACCAACCGGTGTGCCTACAATGGATGTACCATACGATGATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGTTTGCGAAAATGTCAACATTGTGGTGTTAGCGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCCATGCAAATTGCCAATCATTCAACAAATGGCGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG | 1770 | 49.1 | MYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQGFLSGAIRAFDKLMAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGDVMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGCDVPTGVPTMDVPYDDNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQSLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSLDPVEEDINETTVELTNSLPMQIANHSTNGDEQEPLIELANPSDTDIDIPTNFD | 589 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2698630 | 2715290 | - | Cp4.1LG11g04800.1 | Cpe11g00472 | 477266 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00472 | 589 | Pfam | GATA zinc finger | 206 | 242 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | Pfam | GATA zinc finger | 441 | 477 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | ProSiteProfiles | CCT domain profile. | 406 | 448 | IPR010402 | GO:0005515 | |
Cpe11g00472 | 589 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 200 | 250 | - | - | |
Cpe11g00472 | 589 | CDD | ZnF_GATA | 205 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | MobiDBLite | consensus disorder prediction | 525 | 539 | - | - | |
Cpe11g00472 | 589 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 233 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cpe11g00472 | 589 | MobiDBLite | consensus disorder prediction | 171 | 203 | - | - | |
Cpe11g00472 | 589 | ProSiteProfiles | GATA-type zinc finger domain profile. | 205 | 259 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | SMART | GATA_3 | 435 | 488 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | SMART | GATA_3 | 200 | 253 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | Gene3D | - | 202 | 252 | IPR013088 | GO:0006355|GO:0008270 | |
Cpe11g00472 | 589 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 63 | 257 | - | - | |
Cpe11g00472 | 589 | Pfam | tify domain | 341 | 372 | IPR010399 | - | |
Cpe11g00472 | 589 | Pfam | tify domain | 73 | 105 | IPR010399 | - | |
Cpe11g00472 | 589 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Cpe11g00472 | 589 | ProSitePatterns | GATA-type zinc finger domain. | 441 | 468 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | ProSiteProfiles | GATA-type zinc finger domain profile. | 435 | 483 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515 | |
Cpe11g00472 | 589 | Pfam | CCT motif | 406 | 437 | IPR010402 | GO:0005515 | |
Cpe11g00472 | 589 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Cpe11g00472 | 589 | SMART | tify_2 | 338 | 373 | IPR010399 | - | |
Cpe11g00472 | 589 | MobiDBLite | consensus disorder prediction | 187 | 201 | - | - | |
Cpe11g00472 | 589 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 63 | 257 | IPR045280 | GO:0006355 | |
Cpe11g00472 | 589 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 439 | 485 | - | - | |
Cpe11g00472 | 589 | ProSiteProfiles | Tify domain profile. | 338 | 373 | IPR010399 | - | |
Cpe11g00472 | 589 | CDD | ZnF_GATA | 440 | 484 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00472 | 589 | Gene3D | - | 431 | 491 | IPR013088 | GO:0006355|GO:0008270 | |
Cpe11g00472 | 589 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 274 | 437 | IPR045280 | GO:0006355 | |
Cpe11g00472 | 589 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 437 | 589 | IPR045280 | GO:0006355 | |
Cpe11g00472 | 589 | MobiDBLite | consensus disorder prediction | 558 | 589 | - | - | |
Cpe11g00472 | 589 | MobiDBLite | consensus disorder prediction | 511 | 539 | - | - | |
Cpe11g00472 | 589 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 274 | 437 | - | - | |
Cpe11g00472 | 589 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 437 | 589 | - | - | |
Cpe11g00472 | 589 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515 | |
Cpe11g00472 | 589 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00363 | Cpe-Chr4:4272010 | Cpe11g00472 | Cpe-Chr11:2698630 | 1.67E-52 | dispersed | |
Cpe11g00472 | Cpe-Chr11:2698630 | Cpe12g00537 | Cpe-Chr12:5509944 | 2.40E-47 | dispersed | |
Cpe11g00472 | Cpe-Chr11:2698630 | Cpe15g00382 | Cpe-Chr15:5041268 | 1.30E-43 | wgd | |
Cpe11g00472 | Cpe-Chr11:2698630 | Cpe07g00176 | Cpe-Chr7:1051500 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50234 | PF06203 | CCT | 8.60E-15 | CL0281 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00472 | - | - | csv:101214596 | 543.117 |