Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00479 ATGGTTCATCATGGTTCTACCAAATTTTCGCATAAATTGGGAATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCAACATCACACAGTCTGAGGCACAATTCTGTTAGTCTTCAGCTCTTACGCAGTGTAAGTCGCTCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAACCTAGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTTTTGACAAGATATTATGATGCGTTACGTGGCAGTCCTCTGTTACTGAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTTCGTTACGAATTCTTATGTTCAACCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTCTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTGGCATTTGCCTACTGTATATCAAGTTTGATTCAACAAGTACAAAAGTTTTCTTCTGAATCAAATGACTCGAGTGATACAAGAAATATGGGCTATGATTTTGCTGGTAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTGACTGCTGGGGGTCTCGGAACTGTATTGCTTACTCTTGCGGGTCGTGAGATATTTACCAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAAACAAAGATTAATGGATATGAAGTCTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCACCAACCATTATCCGAGGAGATGATCGTGAAGCAGTTCATATTCCGAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTCTTGGATAACATCGATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGCCGCCAATTGATGTGCAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCGACTCCCATTCGCACTGTTCAGAAAATATATGGTGAGGTTGACTTGGAGAACGTACCATTTTCCGAGACCATGTATTCACGTACGGGGGCTACTAACCGTCCACTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAGAGTCTCTAGAAGTCCTACTCGCTCGTCAAACGAAGAAAAAGATGCTAAACAAGAGACAGTCTCGACTACAGGGACGAAAGCCCCCGACATAGATGATAGAAAGCCGGTTACTCCATCTGGTACTGCACCTAAGCCGCCTTCAACAGGGTCGTCGGTGTCGAACACTCAGACTCAGGATTTATCAACCAATACTCCAGAAGAAAGCAGCACGGAAAAGGCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTGATAGGACTGAATTCCAAGCTGCCCAAAAGATCACCCTCAGCTTCCAGTTCCGGCAGCGAGAAAGATGATATTCCTCCTCCCTCAAGCTTGCAGAATAATAAGCAAGACGGCGAGAAGGGCTCTGCATCATCAGTAGTGGGCAGGCCACCATTGGAGGAGAATATCGTCCTTGGAGTTGCCTTGGAAGGGTCCAAAAGAACTCTTCCAATTGATGAAGATTCAGATCCGTCTCCCTTTCACTCTCCTGCTGATTCAAAAGAAATCTCCACACAGAGGAATGGGAGCGAGTTTCCTCCCAATAGCAAGGATTTGAGAGATGGCCAGTTGCCTGCAGTTCCTGGTGCGACGAAAAATGATTGA 2139 43.85 MVHHGSTKFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSHSLRHNSVSLQLLRSVSRSMYPVSSRANVFVCRSVLEPSGGAGTAVLKSAAVVLTRYYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYFVTNSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFSSESNDSSDTRNMGYDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNIDPENQALMIMVSCFVKTSRFEEYLCVKPPIDVQEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKARVSRSPTRSSNEEKDAKQETVSTTGTKAPDIDDRKPVTPSGTAPKPPSTGSSVSNTQTQDLSTNTPEESSTEKAVTSNEIKGEKKDVIGLNSKLPKRSPSASSSGSEKDDIPPPSSLQNNKQDGEKGSASSVVGRPPLEENIVLGVALEGSKRTLPIDEDSDPSPFHSPADSKEISTQRNGSEFPPNSKDLRDGQLPAVPGATKND 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2754517 2760188 + Cp4.1LG11g04750.1 Cpe11g00479 477273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00479 712 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 703 IPR045042 -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 601 633 - -
Cpe11g00479 712 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 659 712 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 550 582 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 502 526 - -
Cpe11g00479 712 Pfam Mechanosensitive ion channel 239 431 IPR006685 GO:0016020|GO:0055085
Cpe11g00479 712 Gene3D - 298 353 IPR023408 -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 502 645 - -
Cpe11g00479 712 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 703 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 659 673 - -
Cpe11g00479 712 Gene3D - 192 296 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 583 597 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 676 691 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00479 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1151.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00725 Cpe-Chr7:6161195 Cpe11g00479 Cpe-Chr11:2754517 3.40E-07 transposed
Cpe14g00646 Cpe-Chr14:4178988 Cpe11g00479 Cpe-Chr11:2754517 0 transposed
Cpe11g00479 Cpe-Chr11:2754517 Cpe07g00169 Cpe-Chr7:1006208 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00725 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.1e-133 471.9
Cpe14g00646 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 59.8 4.0e-197 685.3
Cpe11g00479 . 10 701 Mechanosensitive Ion Channel Family AT5G10490 55.4 8.9e-189 657.5
Cpe07g00169 . 61 698 Mechanosensitive Ion Channel Family AT5G10490 52.9 1.8e-173 606.7
Cpe11g00479 . 10 681 Mechanosensitive Ion Channel Family AT1G58200 57.0 1.6e-198 689.9
Cpe14g00646 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 52.2 1.2e-177 620.5
Cpe07g00169 . 10 514 Mechanosensitive Ion Channel Family AT1G58200 59.8 1.4e-170 597.0
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.1e-263 906.7
Cpe16g00335 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.5 1.5e-246 849.7
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.7 9.3e-284 973.4
Cpe04g00610 . 65 911 Mechanosensitive Ion Channel Family AT1G78610 51.3 1.5e-225 780.0
Cpe16g00335 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.6 1.1e-233 807.0
Cpe04g00610 . 270 905 Mechanosensitive Ion Channel Family AT2G17000 56.0 2.0e-193 673.3
Cpe02g00286 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.7 1.4e-174 610.5
Cpe18g00332 . 58 753 Mechanosensitive Ion Channel Family AT5G12080 54.2 3.1e-203 705.7
Cpe02g00286 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-188 655.6
Cpe04g01033 . 104 797 Mechanosensitive Ion Channel Family AT5G12080 51.0 4.2e-184 642.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00479 Cpe_Chr11 FPKM 15.337679 16.552265 10.697548 10.407848 11.128609 11.849433 12.533117 14.149859 15.155724 15.423737