Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00479 ATGGTTCATCATGGTTCTACCAAATTTTCGCATAAATTGGGAATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCAACATCACACAGTCTGAGGCACAATTCTGTTAGTCTTCAGCTCTTACGCAGTGTAAGTCGCTCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAACCTAGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTTTTGACAAGATATTATGATGCGTTACGTGGCAGTCCTCTGTTACTGAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTTCGTTACGAATTCTTATGTTCAACCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTCTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTGGCATTTGCCTACTGTATATCAAGTTTGATTCAACAAGTACAAAAGTTTTCTTCTGAATCAAATGACTCGAGTGATACAAGAAATATGGGCTATGATTTTGCTGGTAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTGACTGCTGGGGGTCTCGGAACTGTATTGCTTACTCTTGCGGGTCGTGAGATATTTACCAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAAACAAAGATTAATGGATATGAAGTCTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCACCAACCATTATCCGAGGAGATGATCGTGAAGCAGTTCATATTCCGAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTCTTGGATAACATCGATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGCCGCCAATTGATGTGCAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCGACTCCCATTCGCACTGTTCAGAAAATATATGGTGAGGTTGACTTGGAGAACGTACCATTTTCCGAGACCATGTATTCACGTACGGGGGCTACTAACCGTCCACTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAGAGTCTCTAGAAGTCCTACTCGCTCGTCAAACGAAGAAAAAGATGCTAAACAAGAGACAGTCTCGACTACAGGGACGAAAGCCCCCGACATAGATGATAGAAAGCCGGTTACTCCATCTGGTACTGCACCTAAGCCGCCTTCAACAGGGTCGTCGGTGTCGAACACTCAGACTCAGGATTTATCAACCAATACTCCAGAAGAAAGCAGCACGGAAAAGGCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTGATAGGACTGAATTCCAAGCTGCCCAAAAGATCACCCTCAGCTTCCAGTTCCGGCAGCGAGAAAGATGATATTCCTCCTCCCTCAAGCTTGCAGAATAATAAGCAAGACGGCGAGAAGGGCTCTGCATCATCAGTAGTGGGCAGGCCACCATTGGAGGAGAATATCGTCCTTGGAGTTGCCTTGGAAGGGTCCAAAAGAACTCTTCCAATTGATGAAGATTCAGATCCGTCTCCCTTTCACTCTCCTGCTGATTCAAAAGAAATCTCCACACAGAGGAATGGGAGCGAGTTTCCTCCCAATAGCAAGGATTTGAGAGATGGCCAGTTGCCTGCAGTTCCTGGTGCGACGAAAAATGATTGA 2139 43.85 MVHHGSTKFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSHSLRHNSVSLQLLRSVSRSMYPVSSRANVFVCRSVLEPSGGAGTAVLKSAAVVLTRYYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYFVTNSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFSSESNDSSDTRNMGYDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNIDPENQALMIMVSCFVKTSRFEEYLCVKPPIDVQEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKARVSRSPTRSSNEEKDAKQETVSTTGTKAPDIDDRKPVTPSGTAPKPPSTGSSVSNTQTQDLSTNTPEESSTEKAVTSNEIKGEKKDVIGLNSKLPKRSPSASSSGSEKDDIPPPSSLQNNKQDGEKGSASSVVGRPPLEENIVLGVALEGSKRTLPIDEDSDPSPFHSPADSKEISTQRNGSEFPPNSKDLRDGQLPAVPGATKND 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2754517 2760188 + Cp4.1LG11g04750.1 Cpe11g00479 477273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00479 712 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 703 IPR045042 -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 601 633 - -
Cpe11g00479 712 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 659 712 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 550 582 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 502 526 - -
Cpe11g00479 712 Pfam Mechanosensitive ion channel 239 431 IPR006685 GO:0016020|GO:0055085
Cpe11g00479 712 Gene3D - 298 353 IPR023408 -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 502 645 - -
Cpe11g00479 712 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 703 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 659 673 - -
Cpe11g00479 712 Gene3D - 192 296 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 583 597 - -
Cpe11g00479 712 MobiDBLite consensus disorder prediction 676 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00725 Cpe-Chr7:6161195 Cpe11g00479 Cpe-Chr11:2754517 3.40E-07 transposed
Cpe14g00646 Cpe-Chr14:4178988 Cpe11g00479 Cpe-Chr11:2754517 0 transposed
Cpe11g00479 Cpe-Chr11:2754517 Cpe07g00169 Cpe-Chr7:1006208 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00479 K22047 - csv:101213477 1151.35