Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00483 ATGTTATCCAAATTCCATCTCAGTCGTCACTTTACCCACCCTCCGCCCCATCAACTGGAGGATGAACCTACCGCCGCCATGCCTTTGCCGTTCAAACCTCTCCCGGAACCAATCTCTGCCGCCGATGATTCCACCATCGAGGTGGTCCGGCGGCCTAGGGGTCGCCCACCGGGCTCCAAAAACAAACCGAAACCGCCTCTCGTCATAACCCGGGAACCCGAACCGACTATGCGGCCGTACGTTCTAGAAGTGGCTGGTGGAAACGACGTCGTTGAAGCTATTTTACGATTTTGCCGTCAGAAAAATACGGCCCTTTGTGTTCTTAACGGCTCCGGCACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCTACCCCTAGCGCCACCGTCACATTTCACGGCTGTTTTGAGATCCTCTCCATTTCCGCCACCGTGTTTCCCGAAACGATGTCGTTTCCTGTCCCCAACGGTTTCACCATCTCCCTCGCTGGACATCAGGGTCAAATCGTCGGCGGCATGGTTGCCGGCGCCTTAATCTCTGCCGGTACAGTTTTCGTCATCGCCTCGTCGTTCAACAATCCGATGTACCTCCGGCTTCCCGAACTGGATGAGCTCAAGAATTCGGAATCCGGCGGCGGCGAAGTTCACTCCCCACATGTCTCCGTCGCCGGAGATAGTAGCGGGCACCGACCCGGGCAGAGTCGAGGGCGCGGGCAGCTTGTGGAATCCCGCGGAATGGCTATAATGAGTTGCCACGCGCCGTCCGACGTAGTATGGGCGCCGACGGCGAGGCAACCGCCACCGCCGCCGTACTAA 816 58.21 MLSKFHLSRHFTHPPPHQLEDEPTAAMPLPFKPLPEPISAADDSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPTMRPYVLEVAGGNDVVEAILRFCRQKNTALCVLNGSGTVANVSLRQPSATPSATVTFHGCFEILSISATVFPETMSFPVPNGFTISLAGHQGQIVGGMVAGALISAGTVFVIASSFNNPMYLRLPELDELKNSESGGGEVHSPHVSVAGDSSGHRPGQSRGRGQLVESRGMAIMSCHAPSDVVWAPTARQPPPPPY 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2791560 2792375 + Cp4.1LG11g04850.1 Cpe11g00483 477277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00483 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 270 IPR014476 GO:0003680
Cpe11g00483 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 39 270 - -
Cpe11g00483 271 MobiDBLite consensus disorder prediction 207 240 - -
Cpe11g00483 271 CDD DUF296 78 191 IPR005175 -
Cpe11g00483 271 ProSiteProfiles PPC domain profile profile. 74 218 IPR005175 -
Cpe11g00483 271 MobiDBLite consensus disorder prediction 1 71 - -
Cpe11g00483 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 193 IPR005175 -
Cpe11g00483 271 Gene3D - 77 215 - -
Cpe11g00483 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00342 Cpe-Chr2:1843698 Cpe11g00483 Cpe-Chr11:2791560 9.58E-88 dispersed
Cpe06g00453 Cpe-Chr6:2640759 Cpe11g00483 Cpe-Chr11:2791560 2.86E-86 dispersed
Cpe11g00483 Cpe-Chr11:2791560 Cpe01g01079 Cpe-Chr1:6366461 3.71E-40 dispersed
Cpe18g00192 Cpe-Chr18:3596933 Cpe11g00483 Cpe-Chr11:2791560 1.06E-45 dispersed
Cpe11g00483 Cpe-Chr11:2791560 Cpe07g00165 Cpe-Chr7:981737 4.54E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00483 - - bhj:120075835 389.808