Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00494 ATGGAGCTCGACGAGCACGTTTTCTTAGAGGAGTTGATGGCTCTACGTAGAGATTCAAATTGGGACGCCATTCCAAATGAACTTAGCGATCTCTGTTGGAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCGGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCTGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGACAGGAATGGCCGATTCCGCCTATGCTGCCATGGAAGTAGCAGCGGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGCGGAGCGAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTTGCGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACGAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCGAAGAATCTAATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGATGGATCAAATCCAAGGACGAATTCATTGAACAACACAAAACCGAGCGAATTGGTAGCGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGCAAAACCAGGATTGATCTTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTAATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGGAAATAAAGCAGAGAACAGAACTGAAGCCTGAAGAACTGAAGGAAGCTTTATTTAGGAATTCAGGTTATGGGGGAAGCTGCTTGTAG 1017 47.0 MELDEHVFLEELMALRRDSNWDAIPNELSDLCWNAWAFDYCFDQSGMNFHPNSSSEPLSAQNLDEFYHPLGNEFSVTGMADSAYAAMEVAAAPLPFQAERPNAEREGEGEGEEEEELGFLADEIQNMEVVQVQSACKMEPNQSPELPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDGSNPRTNSLNNTKPSELVARNSPKFEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEIKQRTELKPEELKEALFRNSGYGGSCL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2865517 2867992 + Cp4.1LG11g04870.1 Cpe11g00494 477288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00494 338 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 338 - -
Cpe11g00494 338 SMART finulus 174 223 IPR011598 GO:0046983
Cpe11g00494 338 Gene3D - 156 232 IPR036638 GO:0046983
Cpe11g00494 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Cpe11g00494 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 235 IPR036638 GO:0046983
Cpe11g00494 338 MobiDBLite consensus disorder prediction 159 182 - -
Cpe11g00494 338 CDD ACT_UUR-ACR-like 263 304 - -
Cpe11g00494 338 Pfam Helix-loop-helix DNA-binding domain 174 217 IPR011598 GO:0046983
Cpe11g00494 338 Coils Coil 207 227 - -
Cpe11g00494 338 PANTHER DNA BINDING PROTEIN 3 338 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00467 Cpe11g00494 CCT
Cpe02g00490 Cpe11g00494 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00490 Cpe-Chr2:2842059 Cpe11g00494 Cpe-Chr11:2865517 2.72E-84 dispersed
Cpe11g00494 Cpe-Chr11:2865517 Cpe04g00600 Cpe-Chr4:6299847 4.82E-21 dispersed
Cpe10g00525 Cpe-Chr10:3080435 Cpe11g00494 Cpe-Chr11:2865517 1.13E-78 wgd
Cpe11g00494 Cpe-Chr11:2865517 Cpe19g00722 Cpe-Chr19:5635671 6.47E-64 wgd
Cpe11g00494 Cpe-Chr11:2865517 Cpe06g00467 Cpe-Chr6:2750571 4.25E-85 wgd
Cpe11g00494 Cpe-Chr11:2865517 Cpe07g00150 Cpe-Chr7:849756 4.14E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50237 PF00010 HLH 6.30E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00494 - - csv:101221329 520.776