Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00511 ATGGCCTACTCCTCCGACCACCACCACCACCACCACCACACCGCTGCCGCTGAACACGACCTCTTCTTCGTTGAGAACCTCCTCGATTTCTCCAACCACGCCGACGCCGACGACCACCACGCCGACGCCGGGTTATTATCCGACAATAGTAATAATAATCATCATAATACTAATACTCCCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGAATTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAATTTGGAATTAATCACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGTCCACCCGAAACGCCGCCGCTATCTTCAACCCGGATGTTGTTTCCGTTCCGGCGAAGGCTCGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCACTCCTTCTTCCTCTTTCTCCGACCACCTCCTCGTCTGAATCCGAAATTAACGCTGACCCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCCAAGAAGAAGGATAGTTCGGAAGGTGGAGTGTCTCCTGCCGGAGAGGAGCGTAGGTGCATGCATTGCGCCACCGACAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAATGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTGCGTCGGCAGAAGGAGATTATTAGAGGCCAACAACCGCAGCCATTGGTTTTGGATCATCACCGCGACCTCATCTTTGATGCTTCCAGCTGTGATAATTATCTTATCTATCAACATGTAGGCCCCGATTTACGTCAGCTACGCTGCAGCCGTTTTCCGTAG 1005 52.74 MAYSSDHHHHHHHTAAAEHDLFFVENLLDFSNHADADDHHADAGLLSDNSNNNHHNTNTPSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDELLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVSTRNAAAIFNPDVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESEINADPPQLVKKAPPKAVVTAKKKDSSEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQPQPLVLDHHRDLIFDASSCDNYLIYQHVGPDLRQLRCSRFP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2998527 2999974 - Cp4.1LG11g05190.1 Cpe11g00511 477305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00511 334 PANTHER GATA TRANSCRIPTION FACTOR 10 328 - -
Cpe11g00511 334 ProSiteProfiles GATA-type zinc finger domain profile. 215 251 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 279 - -
Cpe11g00511 334 MobiDBLite consensus disorder prediction 41 63 - -
Cpe11g00511 334 CDD ZnF_GATA 220 267 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 PIRSF Txn_fac_GATA_plant 5 305 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe11g00511 334 MobiDBLite consensus disorder prediction 45 63 - -
Cpe11g00511 334 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 SMART GATA_3 215 265 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 Gene3D - 215 290 IPR013088 GO:0006355|GO:0008270
Cpe11g00511 334 MobiDBLite consensus disorder prediction 173 216 - -
Cpe11g00511 334 PANTHER GATA TRANSCRIPTION FACTOR 10 328 - -
Cpe11g00511 334 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00489 Cpe11g00511 CCT
Cpe07g00206 Cpe11g00511 CCT
Cpe06g00489 Cpe11g00511 ECH
Cpe07g00206 Cpe11g00511 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00489 Cpe-Chr6:2895941 Cpe11g00511 Cpe-Chr11:2998527 1.31E-78 dispersed
Cpe11g00511 Cpe-Chr11:2998527 Cpe17g00539 Cpe-Chr17:4491655 1.56E-62 dispersed
Cpe08g00025 Cpe-Chr8:170002 Cpe11g00511 Cpe-Chr11:2998527 1.36E-33 transposed
Cpe11g00511 Cpe-Chr11:2998527 Cpe07g00206 Cpe-Chr7:1328410 2.59E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50238 PF00320 GATA 1.70E-15 CL0167 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00511 - - csv:101205219 345.895