Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00511 ATGGCCTACTCCTCCGACCACCACCACCACCACCACCACACCGCTGCCGCTGAACACGACCTCTTCTTCGTTGAGAACCTCCTCGATTTCTCCAACCACGCCGACGCCGACGACCACCACGCCGACGCCGGGTTATTATCCGACAATAGTAATAATAATCATCATAATACTAATACTCCCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGAATTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAATTTGGAATTAATCACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGTCCACCCGAAACGCCGCCGCTATCTTCAACCCGGATGTTGTTTCCGTTCCGGCGAAGGCTCGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCACTCCTTCTTCCTCTTTCTCCGACCACCTCCTCGTCTGAATCCGAAATTAACGCTGACCCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCCAAGAAGAAGGATAGTTCGGAAGGTGGAGTGTCTCCTGCCGGAGAGGAGCGTAGGTGCATGCATTGCGCCACCGACAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAATGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTGCGTCGGCAGAAGGAGATTATTAGAGGCCAACAACCGCAGCCATTGGTTTTGGATCATCACCGCGACCTCATCTTTGATGCTTCCAGCTGTGATAATTATCTTATCTATCAACATGTAGGCCCCGATTTACGTCAGCTACGCTGCAGCCGTTTTCCGTAG 1005 52.74 MAYSSDHHHHHHHTAAAEHDLFFVENLLDFSNHADADDHHADAGLLSDNSNNNHHNTNTPSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDELLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVSTRNAAAIFNPDVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESEINADPPQLVKKAPPKAVVTAKKKDSSEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQPQPLVLDHHRDLIFDASSCDNYLIYQHVGPDLRQLRCSRFP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2998527 2999974 - Cp4.1LG11g05190.1 Cpe11g00511 477305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00511 334 PANTHER GATA TRANSCRIPTION FACTOR 10 328 - -
Cpe11g00511 334 ProSiteProfiles GATA-type zinc finger domain profile. 215 251 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 279 - -
Cpe11g00511 334 MobiDBLite consensus disorder prediction 41 63 - -
Cpe11g00511 334 CDD ZnF_GATA 220 267 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 PIRSF Txn_fac_GATA_plant 5 305 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe11g00511 334 MobiDBLite consensus disorder prediction 45 63 - -
Cpe11g00511 334 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 SMART GATA_3 215 265 IPR000679 GO:0006355|GO:0043565
Cpe11g00511 334 Gene3D - 215 290 IPR013088 GO:0006355|GO:0008270
Cpe11g00511 334 MobiDBLite consensus disorder prediction 173 216 - -
Cpe11g00511 334 PANTHER GATA TRANSCRIPTION FACTOR 10 328 - -
Cpe11g00511 334 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00511 - - - csv:101205219 345.895
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00489 Cpe11g00511 CCT
Cpe07g00206 Cpe11g00511 CCT
Cpe06g00489 Cpe11g00511 ECH
Cpe07g00206 Cpe11g00511 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00489 Cpe-Chr6:2895941 Cpe11g00511 Cpe-Chr11:2998527 1.31E-78 dispersed
Cpe11g00511 Cpe-Chr11:2998527 Cpe17g00539 Cpe-Chr17:4491655 1.56E-62 dispersed
Cpe08g00025 Cpe-Chr8:170002 Cpe11g00511 Cpe-Chr11:2998527 1.36E-33 transposed
Cpe11g00511 Cpe-Chr11:2998527 Cpe07g00206 Cpe-Chr7:1328410 2.59E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00511 CCT,ECH 66 328 C2C2-Gata Transcription Factor Family AT5G25830 51.9 1.7e-60 230.3
Cpe06g00489 CCT,CST,ECH 59 320 C2C2-Gata Transcription Factor Family AT5G25830 51.4 1.0e-57 221.1
Cpe14g00550 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.7 8.5e-63 238.0
Cpe10g00648 . 108 291 C2C2-Gata Transcription Factor Family AT5G66320 50.9 2.7e-45 179.9
Cpe06g00489 CCT,CST,ECH 48 317 C2C2-Gata Transcription Factor Family AT4G32890 50.4 1.1e-53 207.6
Cpe07g00206 CCT,CST,ECH 49 247 C2C2-Gata Transcription Factor Family AT4G32890 50.5 8.3e-41 164.9
Cpe05g00222 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-133 471.9
Cpe08g00714 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.6 2.6e-132 469.5
Cpe15g00304 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 50.7 3.7e-126 449.1
Cpe08g00714 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 5.6e-113 405.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50238 PF00320 GATA 1.70E-15 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00511 Cpe_Chr11 FPKM 137.74324 151.960709 308.546051 307.82254 202.160645 210.053802 196.196198 67.892654 64.903801 70.224205