Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00511 | ATGGCCTACTCCTCCGACCACCACCACCACCACCACCACACCGCTGCCGCTGAACACGACCTCTTCTTCGTTGAGAACCTCCTCGATTTCTCCAACCACGCCGACGCCGACGACCACCACGCCGACGCCGGGTTATTATCCGACAATAGTAATAATAATCATCATAATACTAATACTCCCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGAATTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAATTTGGAATTAATCACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGTCCACCCGAAACGCCGCCGCTATCTTCAACCCGGATGTTGTTTCCGTTCCGGCGAAGGCTCGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCACTCCTTCTTCCTCTTTCTCCGACCACCTCCTCGTCTGAATCCGAAATTAACGCTGACCCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCCAAGAAGAAGGATAGTTCGGAAGGTGGAGTGTCTCCTGCCGGAGAGGAGCGTAGGTGCATGCATTGCGCCACCGACAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAATGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTGCGTCGGCAGAAGGAGATTATTAGAGGCCAACAACCGCAGCCATTGGTTTTGGATCATCACCGCGACCTCATCTTTGATGCTTCCAGCTGTGATAATTATCTTATCTATCAACATGTAGGCCCCGATTTACGTCAGCTACGCTGCAGCCGTTTTCCGTAG | 1005 | 52.74 | MAYSSDHHHHHHHTAAAEHDLFFVENLLDFSNHADADDHHADAGLLSDNSNNNHHNTNTPSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDELLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVSTRNAAAIFNPDVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESEINADPPQLVKKAPPKAVVTAKKKDSSEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQPQPLVLDHHRDLIFDASSCDNYLIYQHVGPDLRQLRCSRFP | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2998527 | 2999974 | - | Cp4.1LG11g05190.1 | Cpe11g00511 | 477305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00511 | 334 | PANTHER | GATA TRANSCRIPTION FACTOR | 10 | 328 | - | - | |
Cpe11g00511 | 334 | ProSiteProfiles | GATA-type zinc finger domain profile. | 215 | 251 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00511 | 334 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 217 | 279 | - | - | |
Cpe11g00511 | 334 | MobiDBLite | consensus disorder prediction | 41 | 63 | - | - | |
Cpe11g00511 | 334 | CDD | ZnF_GATA | 220 | 267 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00511 | 334 | PIRSF | Txn_fac_GATA_plant | 5 | 305 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Cpe11g00511 | 334 | MobiDBLite | consensus disorder prediction | 45 | 63 | - | - | |
Cpe11g00511 | 334 | ProSitePatterns | GATA-type zinc finger domain. | 221 | 246 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00511 | 334 | SMART | GATA_3 | 215 | 265 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe11g00511 | 334 | Gene3D | - | 215 | 290 | IPR013088 | GO:0006355|GO:0008270 | |
Cpe11g00511 | 334 | MobiDBLite | consensus disorder prediction | 173 | 216 | - | - | |
Cpe11g00511 | 334 | PANTHER | GATA TRANSCRIPTION FACTOR | 10 | 328 | - | - | |
Cpe11g00511 | 334 | Pfam | GATA zinc finger | 221 | 254 | IPR000679 | GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe06g00489 | Cpe11g00511 | CCT | |
Cpe07g00206 | Cpe11g00511 | CCT | |
Cpe06g00489 | Cpe11g00511 | ECH | |
Cpe07g00206 | Cpe11g00511 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00489 | Cpe-Chr6:2895941 | Cpe11g00511 | Cpe-Chr11:2998527 | 1.31E-78 | dispersed | |
Cpe11g00511 | Cpe-Chr11:2998527 | Cpe17g00539 | Cpe-Chr17:4491655 | 1.56E-62 | dispersed | |
Cpe08g00025 | Cpe-Chr8:170002 | Cpe11g00511 | Cpe-Chr11:2998527 | 1.36E-33 | transposed | |
Cpe11g00511 | Cpe-Chr11:2998527 | Cpe07g00206 | Cpe-Chr7:1328410 | 2.59E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50238 | PF00320 | GATA | 1.70E-15 | CL0167 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00511 | - | - | csv:101205219 | 345.895 |