Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00522 ATGACAAAACAAAAAAAAACAGTTATGAACCGAGAAGGTCCATTGGCTGCCGATGAAGATAGAGACATGGAAGAGCCATTGTTGAGCAACTCTGATCGCAAAGGAGGCTTGAGAGCTTTGCCTTTCATTATCGCTAATGGAGCACTTGAGAGGCTCGCGAGTCAGGGTTTATCGCCGAGTATGATACTCTATTTGACTAGGGTTTATGGAATGAACTCCGCCAATGCTTCCAATGTCATCTTCCTCTGGTCTGCCGCCTCAAATTTTACTCCGATCATTTGTGCTTTTCTCGCTGATTCCTATTTTGGTCGGTTTCGGACGATCGCGGCTGGCTGTATCATCAGCTGTTTGGGGATGTTTGTTTTATGGCTAACTGCAATGATTCCCCAAGCAAGGCCTTTCTGTGATGGTGCCATTTGTGATACCCCATCGATAGCTCAACTATTGTTTCTATATTCGTCTTATGCACTAATGTCGATGGGATCTGGCTGCCTTCAATCATCCAACCTCGCCTTTGGCGCAGATCAATTGCACAGGAGAAACAAATCCAATTCAGGCATTTTGGATCGTTATTTCGACTTATATTATGTTTCATCTGCTAGTGGATCACTTATAGGAGTGTCATGTATTGTGTATATTCAAGATCGTATGGGATGGAGGGTGGGCTTTGGGGTTCCTGTTGCACTCATGTTATTATCTACGGTGATTTTTCTCTTGGCCTCTCCCTTATATTTGAAGCCGATGCCTAGCAGTAGTTGGTGTGCTGGGCTTGTGCAAGTTTTCGTTGCTGCTTATAAGAAGAGGCATATGCAAGTATCATCTACTGGCACATCTGAAATGTACCACCACAAAAATGGATCACCGCTTGCCATGCCAAGTGACAAGTTAAGAAATTCCGAGGACGAGCTAGCTTCAGACGGGAGGGCTTCAAATCCTTGGATCCTATGCACTGTGGAACAAGTTGAAGACCTGAAAACACTCATCCGGATAATGGCATTGTGGTCTACTGGGATCCTTGTTTGTGCAGCTTTGAGTCAACCATTTTATGTTCTCCAGGTTGCATCTATGGATCGACACCTTACCCCGACTTTCGAAGTTCCTGCAGGCTCGTTTGGTGCAGTGTTTGTTGTTTCTCTAATATTATGGATTATGTTATATGATCGCTTGATCCTCCCTCTGGTATCCAGTTGCAGGGGGAAACCAACTCGTCTCAGTGGGAAAACCAGAATGGGAATTGGGATTCTTTTGTGCACCTTCAGTTTGGCAGTAACGGCAGTCGTCGAGAGTAATCGACGTGCTTTAGCCATAAAGGAAGGCTTCTCCGACGACCCAGATGCTGTGGTAAACATGTCTGCATTTTGGACCCTACCACGCTACATCTTATTAGGTATGGCCGAGGCTTTCAACGTGATCGGGCAAATCGAATTCTTCTACTATGAGCTTCCAAAAGCCATGTCCAGTGTAGCAACCTCTCTTTTTGGGCTGAGCATGTCTGTAGGCAACTTGGCTGCTAGTTTTATAGTGACTATCGTCGATAATTTCACTAAAGCAGCAGGCGTAAAGAGTTGGGTTTCCAGCAACATCAACCAGGGCCACAGTGACTATTATTATTGGCTGCTTTTTGGTTTGCTGTTCGCTAATTTTTTGTATTTTCTTGCCTGTAGCAAGTCTTATGGTCCTTCCAAGGAAGAAGCAAGAGGTGGATCTAATGCTGAAGATGATCTCAATAATGTTCTGGAAGATGGGGAGAAGACCGGAATCGCCGTAAGCGGCAGCGAGGGAGCCGAGCAAGCTTCAAATTACACAAATGGTGGTTTGAAAACCATGCCCTTCATAATCGTTAATGAGACATTTGAGAGGGTTGCAAGTTTGGGGCTAACTCCTAACATGGTGTTCTACTTAAGGGACGTTTTCGGATTCCAAATCGCCGATGCTTCTATCATTCTGTCTCTGTGGTCTGCTGCTTCCAATGCTTTAGCCATTGTTGGCGCTGTTCTTGCTGATTCTTACTTGGGGCGTTTCTGTGTTATAATTCTCGGATCCTGCAGTAGCCTTCTTGTAAGACTCGTTGATTATCGAAAATTAACTGTTTCCAATTCCATTGATGTTGTAGTCTGTCGTGTGGTATTCCCCTCTGGTATATTATGCGACTCTGCTAATCCTTACCAGCTCGCTGTCCTGTTCTCTTCGTTGGTGTTCATATCCATTGGAGCTGGTTGCATTAGGCCATGTTCTGTAGCCTTTGGTGCAGACCAACTCACCAAGGAGGAAAAGCCCAACAACGATAGTGTCTTGGATTCCTACTTCAATTGGTATTATGCATCGATTGGAATAGCTACGATTATTGCATTATCTCTAATTGTGTTCATTCAAGATCAATTTGGATGGGGAATTGGATTTGCAGTTCCTGCAGTTCTCATGCTTTTTTCTGTGCTAATATTCCTAGTGGGTTCTTCTCTGTACGTGAAAGTGAAGCCAACACAGAGTTTGTTGACTGGGTTTTTACGAGTAATTGTGGTGGCATTTAAGAACCGAAAATTGTCGCTTCCTTTTAGTAACTTTGATCAGTATTACCTTGGTCGTGATCCGAAGTGTCCCATTCCGACCGATTCGATGAGGTGTCTGAATAAGGCCTGTCTTATAAAAGACGGTAAGAACAATTTAAACCCAGATGGCTCAGTGTCCAATCCATGGAACCTATGTTCTGTGGATCAAGTTGAGTCGCTGAAAGCTTTTCTGCGAATCATCCCAATGTGGTCAACAGGCATTCTCATGCTTGTCTGCTTAAACCAAAATTCATTCGGAACGATCCAAGCCAAGACGATGAACAGACACATAACCCGTACTTTCGAAATCCCTGCAGGATCCATCACCATTTTCATGGTCCTTTCTTTATTTTCATGGATCATGTTCTATGACAGAATACTTGTGCCTTTACTTGCAAGACATGGCCATGCTGGTGGACTCAGTCCCAAATTAAGAATTGGAATCGGTCTGCTTCTCTCGTTCTTCGCAATGGCGATTTCAGCAGGCGTTGCATATATAAGGCGTCGAGTTGCCATAGAACAAGGCTTTGAAGACCAACCCAATGCTGTCATTAACATGTCAGCTCTATGGATGGTGCCTCAATGTGTAGTCCTGGGAGTTGCTGAAGCTTTGAACTCGGTCGGACAGGTCGAGTATTTCTACTCGCAGATGCCGAAGACGTTGTCGAGTGTCGCGGTTGCTCTATACTCTTTTGAGATGGCTGTAGCTAACTTGGTGGGAAGCATCATTGTGCAGATGGTAAATAGCATAACAGGAGAAGGAAATAAGACAAGCTGGTTGGATAACAATGTCAACAAGGGTCACTTGGACTACTTTTACTGGCTATGTGCTGCATTGGCTTTGATAAACTTTTTTGGATATCTTACCTACGCGACGTATGCGCTTCAAGTCGAAGGTCTTCGAGGCATCATGACTATACCAGCCACATTGGAGTCAACAACCCTCAAGGACCCTTTCGGTATCGTGCTACACGATCCTCGGCCGTTTCGACCGATCATCGGAACGAACAGAGCTAGATCTGTTCTTAGAAACAGGACTTCTACCTCCAATCATCTAAAATCTGCAGGATTTTTGTTGACACTACATGTTTCAGTCTCAGAAATGCTTGTCTTGTTCTTCGGAGTTCCTGTTAACGGCTTTCGGTCGTTGCTCGACGCAGATGGAGCTGAGCATTTCATTTTCGATCCATTTCGAGACTTAGAGACAGCCCGACCGGAGAAATTGGTATCGGTTTCAAATCCTGTACTAAGCTGGAAGGGTGCATTAGATGGAGTCCTGGCATCCATGAGGCTAAGCAAGTGCATTGCTGATATGGTTTCGTCCGAGTACAACTCTTCGACGATTTCCATCGGGATGTCATCGGACGACCCACGGTCAGATGGCTGCTCATTTTCTCCTCGACGACGACCACGACGGATTCATTCCATGGCATTCAACGACGTCGACCGTGAATTTCGGCTCGAAAACTCGTTGTCGTGTGCTAAGATAGCAGCACGATCGGCTGCATACTTACTTGTTCGAGATGGCTTTACGGACTTCGGAGCTGCCTGCCGTGATGCCTTGGCAGTGACATTGGATGGAGAACTTTCAGCAATTCGGTCAATAGACGAAACTTTGGGGCTCGTCGACGACGCGACGTTCCTTGATAACGACGACGATGAAGACTGTTTCCGACTGATTCAGCACTTTCGGATGATGAAACTTTGCTTTCAAAGGATTCCATGGAAGCATCTCCAGTTTCTTGAAGTTTAG 4299 45.2 MTKQKKTVMNREGPLAADEDRDMEEPLLSNSDRKGGLRALPFIIANGALERLASQGLSPSMILYLTRVYGMNSANASNVIFLWSAASNFTPIICAFLADSYFGRFRTIAAGCIISCLGMFVLWLTAMIPQARPFCDGAICDTPSIAQLLFLYSSYALMSMGSGCLQSSNLAFGADQLHRRNKSNSGILDRYFDLYYVSSASGSLIGVSCIVYIQDRMGWRVGFGVPVALMLLSTVIFLLASPLYLKPMPSSSWCAGLVQVFVAAYKKRHMQVSSTGTSEMYHHKNGSPLAMPSDKLRNSEDELASDGRASNPWILCTVEQVEDLKTLIRIMALWSTGILVCAALSQPFYVLQVASMDRHLTPTFEVPAGSFGAVFVVSLILWIMLYDRLILPLVSSCRGKPTRLSGKTRMGIGILLCTFSLAVTAVVESNRRALAIKEGFSDDPDAVVNMSAFWTLPRYILLGMAEAFNVIGQIEFFYYELPKAMSSVATSLFGLSMSVGNLAASFIVTIVDNFTKAAGVKSWVSSNINQGHSDYYYWLLFGLLFANFLYFLACSKSYGPSKEEARGGSNAEDDLNNVLEDGEKTGIAVSGSEGAEQASNYTNGGLKTMPFIIVNETFERVASLGLTPNMVFYLRDVFGFQIADASIILSLWSAASNALAIVGAVLADSYLGRFCVIILGSCSSLLVRLVDYRKLTVSNSIDVVVCRVVFPSGILCDSANPYQLAVLFSSLVFISIGAGCIRPCSVAFGADQLTKEEKPNNDSVLDSYFNWYYASIGIATIIALSLIVFIQDQFGWGIGFAVPAVLMLFSVLIFLVGSSLYVKVKPTQSLLTGFLRVIVVAFKNRKLSLPFSNFDQYYLGRDPKCPIPTDSMRCLNKACLIKDGKNNLNPDGSVSNPWNLCSVDQVESLKAFLRIIPMWSTGILMLVCLNQNSFGTIQAKTMNRHITRTFEIPAGSITIFMVLSLFSWIMFYDRILVPLLARHGHAGGLSPKLRIGIGLLLSFFAMAISAGVAYIRRRVAIEQGFEDQPNAVINMSALWMVPQCVVLGVAEALNSVGQVEYFYSQMPKTLSSVAVALYSFEMAVANLVGSIIVQMVNSITGEGNKTSWLDNNVNKGHLDYFYWLCAALALINFFGYLTYATYALQVEGLRGIMTIPATLESTTLKDPFGIVLHDPRPFRPIIGTNRARSVLRNRTSTSNHLKSAGFLLTLHVSVSEMLVLFFGVPVNGFRSLLDADGAEHFIFDPFRDLETARPEKLVSVSNPVLSWKGALDGVLASMRLSKCIADMVSSEYNSSTISIGMSSDDPRSDGCSFSPRRRPRRIHSMAFNDVDREFRLENSLSCAKIAARSAAYLLVRDGFTDFGAACRDALAVTLDGELSAIRSIDETLGLVDDATFLDNDDDEDCFRLIQHFRMMKLCFQRIPWKHLQFLEV 1432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3071959 3084532 + Cp4.1LG11g05140.1 Cpe11g00522 477316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00522 1432 MobiDBLite consensus disorder prediction 1 24 - -
Cpe11g00522 1432 Gene3D MFS general substrate transporter like domains 15 566 IPR036259 -
Cpe11g00522 1432 SUPERFAMILY MFS general substrate transporter 22 562 IPR036259 -
Cpe11g00522 1432 Pfam POT family 719 1109 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cpe11g00522 1432 Pfam POT family 105 524 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cpe11g00522 1432 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 33 559 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cpe11g00522 1432 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 603 1140 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cpe11g00522 1432 Gene3D MFS general substrate transporter like domains 584 1147 IPR036259 -
Cpe11g00522 1432 PANTHER PROTEIN NRT1/ PTR FAMILY 1.3 33 559 - -
Cpe11g00522 1432 PANTHER PROTEIN NRT1/ PTR FAMILY 1.3 603 1140 - -
Cpe11g00522 1432 CDD MFS_NPF1_2 40 558 - -
Cpe11g00522 1432 SUPERFAMILY MFS general substrate transporter 619 1140 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00522 K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4 - csv:101206959 868.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00522 Cpe-Chr11:3071959 Cpe18g00806 Cpe-Chr18:7513775 6.32E-94 dispersed
Cpe11g00522 Cpe-Chr11:3071959 Cpe07g00221 Cpe-Chr7:1430865 6.26E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g306 Blo01g01773 . . . Bpe02g01179 Bpe02g00171 . Bma01g02554 Cmo05g00622 . . Cma05g00596 . . . . . Bhi04g00838 . . . Hepe10g0353 . Lcy13g1408 . . . . . . . . . . Cone20ag0602 . . . Cme03g01737 . . . . . . . . . . . . . . Car05g00540 Cpe11g00522 . . . . . . . . Cla08g01227 Cam08g1686 Cec08g1265 Cco08g1385 Clacu08g1384 . Cre08g1169 Lsi08g01090 . Chy03g01243 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003157 1 4 1 2 1 1 1 1 1 3 1 1 1 2 1 1 1 0 1 1 2 4 1 2 3 1 3 2 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00522 Cpe_Chr11 FPKM 5.438003 5.886977 29.5257 32.379807 588.617432 477.962341 516.094849 2.023006 0.662887 1.024326