Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00524 ATGGTGAATTCTGTGGTGGCGCGTGCTACGAGCGATATGTTGATTGGTCCAGATTGGGCTATGAACATCGAGATCTGTGATATGCTGAACCATGACCCTGGGCAAGCGAGGGATGTTGTTAAAGGTATAAAGAAGCGCCTTGGAAGCAAGAACGCAAAAGTTCAACTTCTTGCCCTGACGCTGTTGGAAACAATCATTAAGAATTGTGGGGACATTGTTCATATGCATGTGGCAGAGAAGGGTCTTCTTCATGAGATGGTAAAAATGGTGAAGAAGAAGCCTGATTTTCGCGTCAAAGAGAAGATATTGACTCTGATAGATACTTGGCAAGAAGCTTTTGGAGGAGCTAGGGCGAGATATCCACAATATTATGCTGCATACCATGAATTGTTGCGTGCTGGGGCAGTTTTCCCCCAGAGATCTGAGAGCTCTGGGCCTGTATTCACCCCCCCACAAACACAACCGTTGTCATCTTTTCCTCCTAGTCTGCGGAACCCCGATCGTAATCAGCAAGATGATGCTGAGACCTCAACGGAGTCCGAGTTTCCGACCTTGAGCCTGACTGAAATTCAAAATGCCCGTGGCATTATGGATGTCCTTTCAGAAATGGTTAATGCATTAGAACCAGGGAATAAAGAGGCTATCAGGCAGGAGGTTATTGTTGACTTGGTTGAACAGTGCCGTACTTACAAGCAGAGGGTGGTTCACCTTGTTAACTCAACCGCAGATGAGTCACTACTTTGCCAAGGACTTGCACTTAATGATGATCTTCAGAGGCTACTTGCGAGGCATGAATCGATTTCTTCTGGGAAACCTGTTGCTCAGAACCCAAAGTCTGGATCTGCTACAGCACACGTTGGTGGAGACCAGCCCCTTATTGACACCGGAGATAACAGCAAACAGCCTGAGACAAAAGCTGCCTCAAATGCCGGTGAAGGTTCTCAAATCCTGAACCAGGGGTTGCTTCCGGCACCTGCTTCAACTAATGGTCCAGCTCCTCCAGGTAGGGTTGAACCCAGTGTGGACCTGCTAAGCGGTGACTTCAATTCACCAAAGGCAGAGACTTCATTGGCTCTTGTTCCTGTTGGAGAGCAACAACCTAATAATCCTCCTGCATCCGATCAAAATGCTCTTGTTCTTTTTGACATGTTCTCTGATGGTTCTCCCTGGAATGGTCCAATTCCTCAGCAGCAGCAGCAGCAACTGCAGCAGCCCCCTTCACCTGGCTATGGTTCGCAAACAACCGGTGCATTGCCACCTCCTCCCTGGGAAGCTCAGTCTCCTGATGGTGGCAGCCCAGTATCAGGTTCTCATTACTCTCAACCAATGCAGGTTACTACTCAGGTTATTGTCTCACACGGACTCGGTGGACATCCCCAGGGACCTCAATCCATGGGGAACGAGGTTGTAGGCATAGGTATGTACATCCAGTCCATGACGAGTGGTCAAATGTCTAACGTCACTAGCCATGTTAATCCGAGCCATCAGTTGTTGCACCCACAGCAGATCCCAGGCATGCAAAATATGGTCATGGCAATGCCTCCACAGCATCCGCAAGCTAACCAGATGACACAACCTTATTACCCTCAACAGCAGATGTATGGCAACCACAACAACCAATACAACAACCCTGGCTATGGCTATGGTCATGGTCAATCACAAGTGCCCCAATATCTTGAGCAGCAAATGTATGGCCTATCAGTTGGAGACGACATGAGTATGAGCAGTTCGTCTTCTCAGACTTCTGCTTTATCCTATGTGCCTCCCATGAAGCCGGTCACTAAGCCAGAGGACAAACTTTTCGGGGATCTCGTCGACATTGCGAAATTCAAACCCGCGACGTCCGCTCCTGGCAGAGCTGGTAGCATGTGA 1872 48.77 MVNSVVARATSDMLIGPDWAMNIEICDMLNHDPGQARDVVKGIKKRLGSKNAKVQLLALTLLETIIKNCGDIVHMHVAEKGLLHEMVKMVKKKPDFRVKEKILTLIDTWQEAFGGARARYPQYYAAYHELLRAGAVFPQRSESSGPVFTPPQTQPLSSFPPSLRNPDRNQQDDAETSTESEFPTLSLTEIQNARGIMDVLSEMVNALEPGNKEAIRQEVIVDLVEQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLARHESISSGKPVAQNPKSGSATAHVGGDQPLIDTGDNSKQPETKAASNAGEGSQILNQGLLPAPASTNGPAPPGRVEPSVDLLSGDFNSPKAETSLALVPVGEQQPNNPPASDQNALVLFDMFSDGSPWNGPIPQQQQQQLQQPPSPGYGSQTTGALPPPPWEAQSPDGGSPVSGSHYSQPMQVTTQVIVSHGLGGHPQGPQSMGNEVVGIGMYIQSMTSGQMSNVTSHVNPSHQLLHPQQIPGMQNMVMAMPPQHPQANQMTQPYYPQQQMYGNHNNQYNNPGYGYGHGQSQVPQYLEQQMYGLSVGDDMSMSSSSSQTSALSYVPPMKPVTKPEDKLFGDLVDIAKFKPATSAPGRAGSM 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3098320 3103214 - Cp4.1LG11g05320.1 Cpe11g00524 477318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00524 623 ProSiteProfiles GAT domain profile. 181 269 IPR004152 GO:0035091|GO:0043130
Cpe11g00524 623 PANTHER TOM1-LIKE PROTEIN 388 613 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cpe11g00524 623 PANTHER TOM1-LIKE PROTEIN 1 387 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cpe11g00524 623 MobiDBLite consensus disorder prediction 571 587 - -
Cpe11g00524 623 CDD GAT_GGA_like_plant 189 267 - -
Cpe11g00524 623 MobiDBLite consensus disorder prediction 142 167 - -
Cpe11g00524 623 Gene3D - 184 275 IPR038425 -
Cpe11g00524 623 MobiDBLite consensus disorder prediction 141 185 - -
Cpe11g00524 623 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Cpe11g00524 623 MobiDBLite consensus disorder prediction 390 414 - -
Cpe11g00524 623 CDD VHS 2 132 - -
Cpe11g00524 623 MobiDBLite consensus disorder prediction 294 325 - -
Cpe11g00524 623 MobiDBLite consensus disorder prediction 268 349 - -
Cpe11g00524 623 Gene3D - 1 146 IPR008942 -
Cpe11g00524 623 SUPERFAMILY GAT-like domain 142 270 - -
Cpe11g00524 623 PANTHER TARGET OF MYB PROTEIN 1 388 613 - -
Cpe11g00524 623 PANTHER TARGET OF MYB PROTEIN 1 1 387 - -
Cpe11g00524 623 MobiDBLite consensus disorder prediction 383 440 - -
Cpe11g00524 623 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Cpe11g00524 623 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Cpe11g00524 623 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Cpe11g00524 623 MobiDBLite consensus disorder prediction 571 590 - -
Cpe11g00524 623 MobiDBLite consensus disorder prediction 269 283 - -
Cpe11g00524 623 Pfam GAT domain 195 269 IPR004152 GO:0035091|GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00524 - - - csv:101204650 808.135
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00225 Cpe11g00524 CCT
Cpe02g00517 Cpe11g00524 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00517 Cpe-Chr2:3054056 Cpe11g00524 Cpe-Chr11:3098320 1.57E-179 dispersed
Cpe08g01249 Cpe-Chr8:9046298 Cpe11g00524 Cpe-Chr11:3098320 8.66E-83 dispersed
Cpe11g00524 Cpe-Chr11:3098320 Cpe13g00651 Cpe-Chr13:6181538 2.44E-84 dispersed
Cpe19g00005 Cpe-Chr19:49616 Cpe11g00524 Cpe-Chr11:3098320 1.09E-62 transposed
Cpe11g00524 Cpe-Chr11:3098320 Cpe07g00225 Cpe-Chr7:1451616 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00524 Cpe_Chr11 FPKM 39.700291 53.87616 57.853676 55.776859 13.771927 9.131075 9.944517 42.845657 31.292154 42.426842