Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00527 ATGGAGAATTCTTCTCTCGATCAAGAGACCGCGAAGAAAGTTCTTCGTCAGGTCGAGTTCTATTTCAGTGACAGTAATCTCCCTAGAGATGGTTTTCTTAAGAAAACTATTAGCGGAATCGCCGATGGAATGGTCGATTTGTCTTTGATTTGTACGTTTTCTCGGATGAAAGGACATCTTAAATTGAAGCAGGACGTGAAACCAGAGGAGATTCCAGAAGATACTCTGAAGGCCGTCGCTGAAACTCTAAGAAGCTCCTCAACTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGTAGAACTACTGAACTCCCAAAGCCTGAAGAGTTAATAGAACAATTGGATGATAAAACCATAGCTGCATCACCGTTTGAATATGATGTCAAGCTAGAAGATGTAGAAGCTTTCTTTAATCAAAGTGCAAAGTGTGAGGCTGCCTTGGTAGAATTTTCTACCGAGGAAGATACAGAAAAAGTTTTGAAGGAGAGCTTGCTATATGATGGTGCCAAGTTAGAATTGAAACCAAAGAGGGATTTTGATGAGGAGAGAGCAAAAGAGACAGAGGAGTTCGAAAGTGCACGCGCAAACTCGAGTGCAAACCGCAAGAATAATATTCCCCCAGAATCAAACTACCCTAAAGGCTTAATTGTCGCCTTTACATTGAAAAATGTGTCATCTGGAAGTTCTGCTGAGGAAAATGGATCTCATGGTGTAGCCGCTGATAAGACCGAATGCAAACCAGACGAAAGATTAGATTCCTCAAAGAATGACTCTGAGAAAACGGAGCAAATAGGGGAAGAAGCAAATATGAGTAAAGATGAAGAGATTAAGAACGAGTCAGGCTATATCAGATTTGAAGAGCCTGAAGCTGCCCAGAAAGCTCGTGCGGCTGCAGTACTTGCCGAACAAGGGGGGCTGGCTGTGAAGAGTTTTATGGCCACTTTAGAGCCAGTGTCAGGTGAGGCTGAGAAGGAGTATTGGAGGCTACTCCGCAGCAATCAAGAAAAGCATCATCGCGACTTTAAGGGCAACCGTGGAAGGGGTGGTAAATTCAATAGAGGAGGTGGCAAGCATGCTCGGTCAAGAGGGCACGGCAACGACCGAGGTCGCCCGAATAAAGCACAGAAGGTGTGA 1134 44.18 MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTISGIADGMVDLSLICTFSRMKGHLKLKQDVKPEEIPEDTLKAVAETLRSSSTIKVSEDGKKIGRTTELPKPEELIEQLDDKTIAASPFEYDVKLEDVEAFFNQSAKCEAALVEFSTEEDTEKVLKESLLYDGAKLELKPKRDFDEERAKETEEFESARANSSANRKNNIPPESNYPKGLIVAFTLKNVSSGSSAEENGSHGVAADKTECKPDERLDSSKNDSEKTEQIGEEANMSKDEEIKNESGYIRFEEPEAAQKARAAAVLAEQGGLAVKSFMATLEPVSGEAEKEYWRLLRSNQEKHHRDFKGNRGRGGKFNRGGGKHARSRGHGNDRGRPNKAQKV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3122734 3127582 - Cp4.1LG11g05330.1 Cpe11g00527 477321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00527 377 Gene3D - 273 345 IPR012677 -
Cpe11g00527 377 SUPERFAMILY Winged helix DNA-binding domain 7 107 IPR036390 -
Cpe11g00527 377 Gene3D - 2 105 IPR036388 -
Cpe11g00527 377 SMART la 8 101 IPR006630 -
Cpe11g00527 377 PANTHER BNAANNG34180D PROTEIN 273 377 - -
Cpe11g00527 377 PANTHER BNAANNG34180D PROTEIN 2 231 - -
Cpe11g00527 377 ProSiteProfiles xRRM domain profile. 210 364 IPR014886 GO:0003723
Cpe11g00527 377 MobiDBLite consensus disorder prediction 360 377 - -
Cpe11g00527 377 MobiDBLite consensus disorder prediction 334 377 - -
Cpe11g00527 377 Pfam La domain 14 84 IPR006630 -
Cpe11g00527 377 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cpe11g00527 377 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cpe11g00527 377 Pfam RNA binding motif 276 343 IPR014886 GO:0003723
Cpe11g00527 377 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Cpe11g00527 377 MobiDBLite consensus disorder prediction 226 283 - -
Cpe11g00527 377 Coils Coil 176 196 - -
Cpe11g00527 377 PANTHER LUPUS LA PROTEIN-RELATED 273 377 IPR045180 -
Cpe11g00527 377 PANTHER LUPUS LA PROTEIN-RELATED 2 231 IPR045180 -
Cpe11g00527 377 MobiDBLite consensus disorder prediction 175 192 - -
Cpe11g00527 377 MobiDBLite consensus disorder prediction 193 207 - -
Cpe11g00527 377 MobiDBLite consensus disorder prediction 175 212 - -
Cpe11g00527 377 CDD LA_like_plant 10 100 - -
Cpe11g00527 377 MobiDBLite consensus disorder prediction 237 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00527 K11090 LA, SSB; lupus La protein - csv:101204162 408.297
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00227 Cpe11g00527 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00527 Cpe-Chr11:3122734 Cpe19g01132 Cpe-Chr19:7610672 1.83E-12 dispersed
Cpe11g00527 Cpe-Chr11:3122734 Cpe07g00227 Cpe-Chr7:1470112 3.81E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00527 Cpe_Chr11 FPKM 3.465982 3.994053 4.187781 6.491516 0.656902 0.667001 1.198274 0.674708 0.978287 0.935532