Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00560 ATGAGCCGGCCGACGACACGTAGTAAGAACAAAAGGCATAAACAAGAGGACAATGCTGATAACAGTTCTGATTTATTGAGGAAAATTCACTCATCTGGGGCAATAACCAATGATGACATCAATCAGCTATATATGATATGGAAGCCGACTTGTCAAGGATGCCGGGTGAATAATAAGGATAACCCAAATTGTTTCTGTGGGTTGATTCCACCTCCTACTGGTAGCAGGAAGGTTGGCTTATGGCAAAAGATTTCAGAAATTGTGCAAGCATTTGGTTCAGATCCTTCCAAGGATCAACGTACTTCTCCTGACTTTCCTGCTGGTCTTACAAATCTTGGTGCAACATGCTATGCTAATAGCATCCTTCAGTGTCTGTACATGAACAAGTGCTTCAGGGAAGGCATATTTTCGGTTGAGTCAGACGTTCTGAAACAAAATCCGGTTCTAGATCAGCTTGTACGTCTCTTTGCTCTCCTCCATGCCAGTAAATTGGCTTTTGTGGATTCATTCCCTTTCATAAAAACACTGGAGTTAGATAATGGAGTCCAGCAGGATAGTCACGAGTTCCTGACTTTGCTTCTTTCTCTGCTGGAACATTGCTTAAGTCACTCAAAAGTTTCTAAAGCAAAAACTATCGTTCAAGATCTTTTCCGTGGAAGCGTGTCTCATGTAACTACGTGCTCACAGTGCGGAAAAGATTCAGAAGCCTCTTCCAAAATGGAGGACTTCTATGAGTTGGAGTTGAATGTTCTGGGCTTGAAAAGCTTAGATGAAAGTTTAAATGATTATCTTAGTGTGGAAGAGCTTCATGGTGATAATCAATACTTTTGTGAGTCATGTAGATCCAGAGTTAATGCTACACGCAATATCAAGCTACGTACGTTGCCCCCTGTTCTAAATTTTCAGCTTAAGCGATGTATTTTTCTTCCAAAGACTACAACGAAGAAGAAAATCACATCTGCATTTTCTTTTCCTGGAGTGTTGGATATGCGGGACAGGCTAGCTGAATCTTCTCAGTCTGAATCAATATATGATTTGTCAGCAGTTCTGATTCATAAAGGTACCGCTGTCAACAGTGGCCATTACGTAGCTCACATCAAGGATGAAAACACAGGGCAGTGGTGGGAATTTGATGACGAAAATGTCTCAAAATTAGGTCATCATCCGTTTGCAGAAAAATCATCAAATGCTAATTCTAAATCTGTTAGAGCCGAGTTAGCTTCCAAGGAAGAAGTAAATGTTACTGTTGAAGGGAATCCAACGAATGGGGTTCAGCAATCATCAGAGACCGGTACCTGTTGTTCCACTGACATCTTTTCATCTAATGATGCCTATATGTTGATGTATAATTTAAGAGGCACTGGGAAGACCACAAAAAAAGTTACTAGCTCTAATGCTGATAGTAAAGAAGTAGAAGGCAACATGGTTCCTTTCCAGGATGGCTTGTCTCTTCCATCACATCTGTGTGATGAGATAAGTAGTTTAAATGAATCCTTTGTTATAGCTTGCCAAGAATATGAATCAAAGAAGAAAGTTGAACTGGGCTTTATCAATGATCGAAGACAGGAGGTCCGATCAATTCTTTCTGAAGCCCCCGTTCACTCACTTGAGGAACCCTTTTGTTGGATTTCCATAGACTGGCTTCGCCAGTGGGCTGATAAGGTCTCCCCACCCATTCTTGATAATTCGCCTATACAGTGTTCGCATGGAAAAGTTCCGATATCAAAGGTTACCTGCATAAAGAGATTGTCCATCAAGGCTTGGGACAAGCTGTTCTCCAAGTATGGTGGGGGCCCCAAACTGACGAATGAAGATATCTGTATGGATTGCCTTATTGCTGGTGCTCAAAATGTAGTTTGCGCTGACGGCTACAGGGACCGAAGAATATCAATGAAAGAAATTGCGTTGAGTGCACTTTCGGGCAGTTATCCAAATGGAACATATATCGTTTCTAGGACATGGTTGCAACAGTGGGTTAAACGGAAAATTCTTGATGCTCCTTCTGAAGCCGATGCAGATCCGACAGCCTCAATCAGGTGTCCTCATGGACAACTTTTGCCCGAGCAAGCTACTGGAGCTAAGCGAGTCCTGGTTCCAGAAGATCTCTGGTGTTTCTTACATGAAGATGCTATTACTCTAAAACCTGATGATCCTATAGGGGTTCCAACTTTTCCCTCAGATGCACGACAGTGTTCTCTGTGCAGTGAGGAGTTATCTGAAGTGGCAGTCATGGAAGATTCAATAAGAGGAGTGAAGCTTAAACAGCGACAAAATCATGAAAGGTTAGCCGTTGGAAAATTCATTCCGCTTTCTCTGCACTGCAAGTATTATTTGGTGCCTACCTCATGGCTTTCAAAGTGGAGAAACTACATCAATGCAAGTGGAAAGAGTGCTTCATTTGTAGAGAAGCCTGAAGATTTGGATGGCGTGATCAATTTTCTGAGGTGTGAAAAGCATTCACGCCTCCTTAAAAGGCCTCCTGACCTGATCTGCAAACGTGGTACGGTGCAGCAGAAGTCCACTGCAGATGTTTTAACAATCATTTCAGAGAACGACTGGAAATTCTTCTGTGAAGAGTGGAAAGGTAGCGAGGCACGCGGCATCTCTGCCGTGATTGAGTCAAGTAGTTGTGTAGGGAATGATATGAATGGATCCTCCAAAGAGAAGTCAATGGCTGAAGAGAATCTCAGTTCCAATGATGAAGTTAGTAATGGGGACTTCAAACAACTAATACTTAAGACTGATCCTGAGATATGTGAAGAATGTATAGGAGAACAAGAAAGCTGCGAGCTAATGCAGAAACTAAATTATATTGGTGAAGATATTTGTGTATATTTCTCCCGGGGGAAGGAAGCGCCAAAATCAATTTTGGAAGCTCCCGAATCCACCTTTGATCCAGATCGCCGAATCTCAAAGCGTGCAAGAAAGACAAATTCCGGGAATTTTGTTAATCTGAAAGTATCTGGTTCAACTTCAGTATACCAGCTAAAAATGATGATATGGGAATGTTTTGGGGTTGTGAAGGAAAACCAGATACTTCGCAAGGGTAATAGGATTATCGATGGAGAAACGGATACTTTGGCAGACAAGAATATATTTCCTGGGGATAAACTATGGGTAACGGATTCGGAGATTCATGAGCATCGAGATATTGCTGATGAGCTTTCTGATCCCAAAATGAACATGCAACATACCGAGGAAGGGTTTCGTGGAACGCTTTTGGCTGCAAATGTTTCATCTGAAGTTGTTTAA 3252 42.0 MSRPTTRSKNKRHKQEDNADNSSDLLRKIHSSGAITNDDINQLYMIWKPTCQGCRVNNKDNPNCFCGLIPPPTGSRKVGLWQKISEIVQAFGSDPSKDQRTSPDFPAGLTNLGATCYANSILQCLYMNKCFREGIFSVESDVLKQNPVLDQLVRLFALLHASKLAFVDSFPFIKTLELDNGVQQDSHEFLTLLLSLLEHCLSHSKVSKAKTIVQDLFRGSVSHVTTCSQCGKDSEASSKMEDFYELELNVLGLKSLDESLNDYLSVEELHGDNQYFCESCRSRVNATRNIKLRTLPPVLNFQLKRCIFLPKTTTKKKITSAFSFPGVLDMRDRLAESSQSESIYDLSAVLIHKGTAVNSGHYVAHIKDENTGQWWEFDDENVSKLGHHPFAEKSSNANSKSVRAELASKEEVNVTVEGNPTNGVQQSSETGTCCSTDIFSSNDAYMLMYNLRGTGKTTKKVTSSNADSKEVEGNMVPFQDGLSLPSHLCDEISSLNESFVIACQEYESKKKVELGFINDRRQEVRSILSEAPVHSLEEPFCWISIDWLRQWADKVSPPILDNSPIQCSHGKVPISKVTCIKRLSIKAWDKLFSKYGGGPKLTNEDICMDCLIAGAQNVVCADGYRDRRISMKEIALSALSGSYPNGTYIVSRTWLQQWVKRKILDAPSEADADPTASIRCPHGQLLPEQATGAKRVLVPEDLWCFLHEDAITLKPDDPIGVPTFPSDARQCSLCSEELSEVAVMEDSIRGVKLKQRQNHERLAVGKFIPLSLHCKYYLVPTSWLSKWRNYINASGKSASFVEKPEDLDGVINFLRCEKHSRLLKRPPDLICKRGTVQQKSTADVLTIISENDWKFFCEEWKGSEARGISAVIESSSCVGNDMNGSSKEKSMAEENLSSNDEVSNGDFKQLILKTDPEICEECIGEQESCELMQKLNYIGEDICVYFSRGKEAPKSILEAPESTFDPDRRISKRARKTNSGNFVNLKVSGSTSVYQLKMMIWECFGVVKENQILRKGNRIIDGETDTLADKNIFPGDKLWVTDSEIHEHRDIADELSDPKMNMQHTEEGFRGTLLAANVSSEVV 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3324704 3339487 + Cp4.1LG11g05590.1 Cpe11g00560 477354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00560 1083 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 990 - -
Cpe11g00560 1083 SMART dusp 533 609 IPR006615 GO:0004843
Cpe11g00560 1083 CDD Ubl_USP48 975 1074 IPR044743 GO:0004197|GO:0004843|GO:0016579
Cpe11g00560 1083 MobiDBLite consensus disorder prediction 1 25 - -
Cpe11g00560 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Cpe11g00560 1083 Gene3D Cysteine proteinases 89 452 - -
Cpe11g00560 1083 SUPERFAMILY Cysteine proteinases 105 452 IPR038765 -
Cpe11g00560 1083 ProSiteProfiles DUSP domain profile. 515 607 IPR006615 GO:0004843
Cpe11g00560 1083 ProSiteProfiles DUSP domain profile. 750 872 IPR006615 GO:0004843
Cpe11g00560 1083 SUPERFAMILY DUSP-like 774 862 IPR035927 -
Cpe11g00560 1083 Gene3D - 746 868 IPR035927 -
Cpe11g00560 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Cpe11g00560 1083 Pfam Ubiquitin carboxyl-terminal hydrolase 108 449 IPR001394 GO:0004843|GO:0016579
Cpe11g00560 1083 SUPERFAMILY DUSP-like 523 606 IPR035927 -
Cpe11g00560 1083 ProSiteProfiles DUSP domain profile. 621 724 IPR006615 GO:0004843
Cpe11g00560 1083 MobiDBLite consensus disorder prediction 882 901 - -
Cpe11g00560 1083 SUPERFAMILY Ubiquitin-like 976 1050 IPR029071 -
Cpe11g00560 1083 MobiDBLite consensus disorder prediction 10 24 - -
Cpe11g00560 1083 CDD Peptidase_C19L 108 449 IPR033841 GO:0004843
Cpe11g00560 1083 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 452 IPR028889 -
Cpe11g00560 1083 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 990 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00560 - - K11858 csv:101204355 2004.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00560 Cpe-Chr11:3324704 Cpe06g00273 Cpe-Chr6:1487181 1.26E-28 dispersed
Cpe11g00560 Cpe-Chr11:3324704 Cpe07g00244 Cpe-Chr7:1577691 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g269 . . . Bda03g00459 . . . . Cmo05g00665 . . . . . Sed01g1313 . . Bhi04g01060 Tan02g2655 Cmetu03g1138 . . . . . . . . . . . . . . . Lsi04g02276 . . Cme03g01678 . . . Bda13g01355 . Bpe04g00420 . . . . . . . . Car05g00581 Cpe11g00560 . . . . . . . . Cla08g01169 Cam08g1632 Cec08g1206 Cco08g1329 Clacu08g1330 . Cre08g1114 . . Chy03g01302 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005534 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00560 Cpe_Chr11 FPKM 12.513823 13.39289 16.504017 15.880673 15.64506 13.347399 15.774576 9.197724 9.159914 8.613192