Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00563 ATGTATAACGGTATTGGGTTACAGACGCCGAGAGGGTCTGGCACTAATGGGTACATTCAGACAAACAAGTTCTTTGTGAGGCCGAAGACTGGAAAGGTTGCTGAAAACACCAGAGGATTCGATGAAGATCAGGGCACTGCTGGTGTTTCCAAGAAACCTAATAAAGATATTCTTGAACATGATCGCAAGCGTCAGATTGAGCTCAAACTTGTCATTCTTGAGGACAAGCTCACTGACCAAGGTTATACAGAGGATGAAATTTCTCAAAAGTTGAAGGAGGCTCGCGAGACTTTGGAAGCTGCTTCAGGTTCTGAGGAAAAAGATGGACCCTCCGCCATCGTACTTGCAGATAAGAAGGTTTCAGATACTCAGTCTCACCAAATTGCTGCAAGAAAGGAGGAGCAGATGAAAACATTGAGAGCTGCACTTGGGTTGAGTTCATCGAACGATAGTGAACAAGTTACAGAAGGGATTTCTGATCCAACAAGAAATAGAAGGGAGGGTCAGAATGCTGATATTAAGCGACAGGAGAAGTCTGAGCATTCGTTTTTAGACAGAGAATTGAACTGGAAAAAGCATGGCTCTGAAGATCATAATGATGATAAGGGTGACAAAAAAAGGGTTTCAAAAGAGTTGAAAGGCCATCTGAAGGATAGAAGAAGGCCCAAGGACGATTCTTCTGATAACGATTCTGTTGGAGAGCATCATAAGGGAACCAAGAAGAATTTGAGAGATAATAGAAGGAATGATTCTGAAAGTGACTTTGAAAGTGATGATGACGAAAAATACAAAACCTCAAGGAAGTCGAAGAAAAATAGAAGGCATGATAGTGACGTTTCTTCTGATACTGATTCTGGTGGAGAGCGCAAGGGAACCAAGAAGCACTTGAGAGATAATCGGAGAGACGCTCCTAAACGTGACCCAGACAGCAATTTTGACCAGAAATATGCCACCTCGAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGACGATTCTTCTGATACTGCTTCTGGTGAAGAGCGCAAGGGAACCATGAAGCACTTGAGAGATAGTCGGAGAGATGCTCCTGAACGTGACCCAGGCAGCAATGTTGACCAGAAACACCTCACCTCGAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGACGATTCTTCTGATGCTGATTCTGGTGAAGAGCGCAAGGGAACCACGAAGCACTTGAGAGATAGTCGGAGAGATGCTCCTGAACATAGTGGTGAGTTTGGGATGGGCAGCCACAGGAAAGGATCTGGTAGACCTAAAAGTCAAAAGGTGATGAAGAAGCAAAGAAGCCGGAAACAGGAGTCCACGGATGAGTCCAATTCTGACAGTGGGATTGATGATAAAGGCAGGCAACTGAAGCACAAGAACCAGCATGGTAAAAGATATGGGGTAGATAGTGACAGCTCTGACCGTGACAGTTCTGATTCTGATGTAGGTCGAAACAAGAGTAAGCATCGATATCACAGCAAACGTGCAGGAAAGAGCAGGGTAGATAGTGAATCCGATTCTGAAAAGTTGAGAAAGCATCCTAAGAAAGATGTTGGTAGACGCAGACATGATACCGATAACGATGAAAGTGGTGATAACAGCTCTAGCAGTGATGAAATAGTGAAGAGGCGCAGAGATAGGAGGTACAATTCTGATGATAAATCTGAAGAAGGTGAATATTTTGGTAAAAGTGGCAAGACAGCCACAAAAGGAACAATAGCTGCTAAAAGGAAACATGATGACAGTGATAAATCTGATGATAGCCAAGCAATTGATAGAAGGGGCAATGATAAACAGAAGAGAGCTAAGAAACATTCGTCTGGTGATGGTTCTGATGCAGATAAGGGAGTAAAATCAAGTGGTGGAGCTCGTGAAAGAGGAAAAGGGAGCTCGAATCATGCAGATGGTTTGGATGAGTCTGTGACAGCAGCTAAGAATACTTCGTACAAGTCTAGGAATGATTCACTCGATGAGTTCAACCGTGCAAATCAACAGACAATGAAAAGCAAGAGAAAGTTAGATGAAGGTGGTGAGGATGAGCAGCAGCCAGAAGCAAAGTCTCGAAGTCGAATTTCTACAAGAGAGTCAGATTTCCATGGAGACCCCAAGAAAGATTTCAAAAATGATTCTGAATCAAGTAGACGTGCACGAAGTGGTAGGTACGAAGAGGCGAGGGATGGCAGGTACAGGGAGGAACCCAAAATTGATTCTGAATCAAACACTAGATCACGCTATAGTGCACACAACGAGGATGATGACAGAAAGTCGACTCGAACAGGAAGCAGATATACTGAAGAAACAGAACATGGAAGTAGACATAATCACAAGGCTAATGAGTCTCACCACCGCAGTAGGACTGATCAAGATATTGAAGAGGGAAAAAGGCACAGCAGCAGCAGATATGAGGAGCAGAGAGGGAGAAAGCATGAAAGGGATGAGGGTATAAAATCTAGCAGGGAAGCTGAAAGAGGGGAGTATCAACCAAGCAGCAGGCTGAGATCTGAGAAAGATTATGAAACTAAAGAATCTACAAGAGATAGGGATGATCCCAGAAAGAGGGCCAAATATGATTCTCGATCGAGCAGACGTGATACGTCGTATTAG 2619 43.68 MYNGIGLQTPRGSGTNGYIQTNKFFVRPKTGKVAENTRGFDEDQGTAGVSKKPNKDILEHDRKRQIELKLVILEDKLTDQGYTEDEISQKLKEARETLEAASGSEEKDGPSAIVLADKKVSDTQSHQIAARKEEQMKTLRAALGLSSSNDSEQVTEGISDPTRNRREGQNADIKRQEKSEHSFLDRELNWKKHGSEDHNDDKGDKKRVSKELKGHLKDRRRPKDDSSDNDSVGEHHKGTKKNLRDNRRNDSESDFESDDDEKYKTSRKSKKNRRHDSDVSSDTDSGGERKGTKKHLRDNRRDAPKRDPDSNFDQKYATSRKHKKNRRHDSDDSSDTASGEERKGTMKHLRDSRRDAPERDPGSNVDQKHLTSRKHKKNRRHDSDDSSDADSGEERKGTTKHLRDSRRDAPEHSGEFGMGSHRKGSGRPKSQKVMKKQRSRKQESTDESNSDSGIDDKGRQLKHKNQHGKRYGVDSDSSDRDSSDSDVGRNKSKHRYHSKRAGKSRVDSESDSEKLRKHPKKDVGRRRHDTDNDESGDNSSSSDEIVKRRRDRRYNSDDKSEEGEYFGKSGKTATKGTIAAKRKHDDSDKSDDSQAIDRRGNDKQKRAKKHSSGDGSDADKGVKSSGGARERGKGSSNHADGLDESVTAAKNTSYKSRNDSLDEFNRANQQTMKSKRKLDEGGEDEQQPEAKSRSRISTRESDFHGDPKKDFKNDSESSRRARSGRYEEARDGRYREEPKIDSESNTRSRYSAHNEDDDRKSTRTGSRYTEETEHGSRHNHKANESHHRSRTDQDIEEGKRHSSSRYEEQRGRKHERDEGIKSSREAERGEYQPSSRLRSEKDYETKESTRDRDDPRKRAKYDSRSSRRDTSY 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3344778 3348869 - Cp4.1LG11g05680.1 Cpe11g00563 477357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00563 872 MobiDBLite consensus disorder prediction 140 872 - -
Cpe11g00563 872 Gene3D - 58 104 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 1 20 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 141 158 - -
Cpe11g00563 872 Coils Coil 84 104 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 36 55 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 502 568 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 159 318 - -
Cpe11g00563 872 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 1 865 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 325 369 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 669 872 - -
Cpe11g00563 872 Pfam cwf21 domain 58 99 IPR013170 -
Cpe11g00563 872 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 1 865 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 378 418 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 640 655 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 437 491 - -
Cpe11g00563 872 MobiDBLite consensus disorder prediction 578 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00563 K13172 SRRM2, SRM300; serine/arginine repetitive matrix protein 2 - csv:101212545 903.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00563 Cpe-Chr11:3344778 Cpe07g00243 Cpe-Chr7:1574473 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g265 . . . . . . . . Cmo05g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00585 Cpe11g00563 . . . . . . . . Cla08g01279 Cam08g1737 Cec08g1319 Cco08g1440 Clacu08g1434 . Cre08g1221 . Csa02g02337 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005994 2 3 0 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00563 Cpe_Chr11 FPKM 0.0 0.0 1.726333 1.109995 0.0 0.0 0.0 0.0 0.0 0.0