Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00565 ATGTCGACGGTCGAAAGCTTGCTCAATCCATCCGCCTCCAAGCTTTTTTCCTCCAAATCCCTGTTCAATCCTTCCATTTCCAGTTCCTCGATTTTCTCGCCCGCTCCGCGATGGAGCAGATTAAGTTCTTCGTCGTTGTCGATTAGGTGCTCGGCAACTCAGCAAATGGAGGCTGTGGTTGATTCTGTAAGTCCAGGGCAGTTCCGAGTTGATGTTCTCTCGGAATCACTGCCATTCATCCAGAAATTTCGAGGTAAAACGATTGTTGTGAAGTACGGAGGGGCCGCCATGAAATCGCGGTCGCTCCAGGCTTCGGTTGTTAACGATCTTGTTCTTCTGTCCTGCGTCGGCCTTCGTCCGATCTTGGTCCATGGCGGCGGGCCGGAAATCAATAACTGGCTCAAACGGCTCAACATTGAGGTCGTTTTCCGCGACGGTCTGCGGGTGACCGACGCCGAAACGATGAAAATAGTGTCGATGGTGTTGGTCGGCGATGTGAATAAGAATCTGGTCTCGTTGATCAATAAGGCCGGAGCATCGGCTGCAGGGCTCTGCGGTGTCGATGGGCGGCTACTTACGGCTCGTCCAGCCCCTAACGCGGCACAGTTAGGATTTGTAGGCGAGGTTGCACGTGTGGATCCTACGGTTCTACAGGCACTTCTGGACAAAGGCCACATTCCGGTGGTTTCTTCGGTGGCTGCCGATGAGTCGGGGCAGATGTACAATATCAACGCGGACACAGTGGCCGGAGAATTAGCGGCGGCGCTGGGGGCGGAGAAGCTGATCTTACTGACGGATGTGGCGGGGATTCTTGAAGACCGTGACGATCCGAAAAGCTTAGTGAAGCAGATAGACATCAAAGGGGTGAAGAAGATGATGGACGAGGGTAGAATCGGCGGAGGGATGATTCCAAAGGTGAGTTGTTGTGTACGATCGTTGGCTCAAGGGGTGAGGACGGCGAGTATCATTGACGGGAGGCTGGAGCATTCGTTGCTGCTAGAGATCATGACTGACAATGGAGCCGGAACCATGATTATAGGCTAA 1044 53.45 MSTVESLLNPSASKLFSSKSLFNPSISSSSIFSPAPRWSRLSSSSLSIRCSATQQMEAVVDSVSPGQFRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSRSLQASVVNDLVLLSCVGLRPILVHGGGPEINNWLKRLNIEVVFRDGLRVTDAETMKIVSMVLVGDVNKNLVSLINKAGASAAGLCGVDGRLLTARPAPNAAQLGFVGEVARVDPTVLQALLDKGHIPVVSSVAADESGQMYNINADTVAGELAAALGAEKLILLTDVAGILEDRDDPKSLVKQIDIKGVKKMMDEGRIGGGMIPKVSCCVRSLAQGVRTASIIDGRLEHSLLLEIMTDNGAGTMIIG 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3353817 3354860 + Cp4.1LG11g05540.1 Cpe11g00565 477359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00565 347 PRINTS Glutamate 5-kinase family signature 117 131 IPR001057 GO:0005524|GO:0016301
Cpe11g00565 347 PRINTS Glutamate 5-kinase family signature 244 271 IPR001057 GO:0005524|GO:0016301
Cpe11g00565 347 PRINTS Glutamate 5-kinase family signature 297 317 IPR001057 GO:0005524|GO:0016301
Cpe11g00565 347 PANTHER N-ACETYLGLUTAMATE SYNTHASE 2 347 - -
Cpe11g00565 347 Pfam Amino acid kinase family 86 323 IPR001048 -
Cpe11g00565 347 PANTHER BNAC04G55460D PROTEIN 2 347 - -
Cpe11g00565 347 Hamap Acetylglutamate kinase [argB]. 85 340 IPR037528 GO:0003991|GO:0006526
Cpe11g00565 347 TIGRFAM argB: acetylglutamate kinase 87 322 IPR004662 GO:0005737
Cpe11g00565 347 CDD AAK_NAGK-C 72 345 IPR041727 -
Cpe11g00565 347 SUPERFAMILY Carbamate kinase-like 69 346 IPR036393 -
Cpe11g00565 347 Gene3D - 63 347 IPR036393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00565 K00930 argB; acetylglutamate kinase [EC:2.7.2.8] - csv:101203871 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00565 Cpe-Chr11:3353817 Cpe19g00679 Cpe-Chr19:5383835 1.97E-07 dispersed
Cpe11g00565 Cpe-Chr11:3353817 Cpe10g00486 Cpe-Chr10:2863758 1.64E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g258 . . . . . . . . Cmo05g00670 . . Cma05g00642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00587 Cpe11g00565 . . . . . . . . . . . . . . . Lsi08g01144 . Chy03g01175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009145 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00565 Cpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0