Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00567 ATGGCTGTCAAAACAGCACAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCGAGCACGGGAACAACTGGACCTAGTGCTGGTTCAAAGTCAGAAGAGCAGCGCTCTGCTGTGGCTCTTCAGTCTGAATTCAATAAGAGGGCTTCCAAGGTTGGATTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACCTTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAGTTTAAAGAAGTTCTAACCATGCGAACTGAAAATTTGAAGGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACCAATCCTTTTGTGCGCCAGCGTCCATTAGCTTCCAGGTCAGCTGCTGGTGCCTCAAGTGCGCCCCCTCCTCCATGGGCCAAGGCGTCCACATCTTTTTCTAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAGCAGCAGCAACAGCAGCAGATGGTTCCGTTACAAGACACTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTAGCCACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGACGAGAACATGGACGATACTCTGTCGAATGTGGAGGGGGCACAGGGAGCATTGCTCAAGTATCTAAACAGTATATCATCAAATAGGTGGCTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTCATGGTTTTCCTATTTTTTGTGGCATAG 1023 44.09 MAVKTAQSFRDRTLEFQNITERLKKSFSSSTGTTGPSAGSKSEEQRSAVALQSEFNKRASKVGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3361050 3367136 + Cp4.1LG11g05600.1 Cpe11g00567 477361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00567 340 Gene3D - 49 303 - -
Cpe11g00567 340 MobiDBLite consensus disorder prediction 170 190 - -
Cpe11g00567 340 MobiDBLite consensus disorder prediction 25 47 - -
Cpe11g00567 340 Pfam SNARE domain 284 336 IPR000727 -
Cpe11g00567 340 SMART tSNARE_6 243 310 IPR000727 -
Cpe11g00567 340 MobiDBLite consensus disorder prediction 207 245 - -
Cpe11g00567 340 CDD SNARE_syntaxin5 251 329 - -
Cpe11g00567 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 310 IPR000727 -
Cpe11g00567 340 ProSitePatterns Syntaxin / epimorphin family signature. 254 293 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe11g00567 340 PANTHER SYNTAXIN 7 339 IPR045242 -
Cpe11g00567 340 SUPERFAMILY t-snare proteins 52 303 IPR010989 GO:0016020|GO:0016192
Cpe11g00567 340 MobiDBLite consensus disorder prediction 168 245 - -
Cpe11g00567 340 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Cpe11g00567 340 PANTHER SYNTAXIN-32-LIKE 7 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00138 Cpe-Chr1:799506 Cpe11g00567 Cpe-Chr11:3361050 4.76E-84 dispersed
Cpe01g01046 Cpe-Chr1:6186927 Cpe11g00567 Cpe-Chr11:3361050 1.15E-92 dispersed
Cpe11g00567 Cpe-Chr11:3361050 Cpe07g00260 Cpe-Chr7:1684677 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00567 K08490 - csv:101203633 520.005