Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00569 ATGGACGTTCCCTCAGTGGAACTGAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTGATGGCACAACCAGAAAATTCTAACAGCAGTGAGCATATCATTGACGTAACTGGCACTGGTGATTCTACCCCCTCTAGTTTACCTCATGGTAGGAATTCAAATGGCTTAAATTTATCACAACCTGAAGATAGGCCTTCAAGTAGTACACAAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGGAATTCTTCATTCATAAGAAGAGGAGATGCGCGACGGCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAACGAAAAACCTCGTGCACCTTTGTTTGCGTGGATTGTGGGATATGCATCTGGGTGTGGTGCCACCCTTCCTCTCCTCTATTGGCGTTATCGACACCACAATCAAGCTTCAGAACAAAGTTCTCTTCAGTCCAGCCAGAATTCTTCTCGCATTAATGCTCCTGCTGGGCCATTCTCTCTTTCTGTTTCTAGGGCGTCAGAAGGGGAAGAACTTCAGCATCCTGCCCCATCCCCTAGAGGCAGTCAAGGGTCAGGAGTAGTAACAGGAAGATTTAAAGTGTTGGTCGAATATTTGAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCCGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTACGCCATGCCTTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCATGTATAATTTCCATCCTTGGGTTTAGAGAGGAGTTGACACAGACCCGAGGAGCCACAGCAGAATCTATTAATGCTTTACCAGCTTATAAATTTAAGCTGAAGAAAAGTAGAAGCGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATCTCTGGAGAAGATGCTGTCTGTTGCATTTGCTTAGCAAAATACGCCAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTTCACAAGGACTGTGTAGATAAATGGTTGAAAATCAACGCACTGTGCCCACTGTGCAAAACCGAGGTCGGTGAGAGTATCATCAGCTCTCTTGATGGGGCTAATAGACAACAGGGTGATTCTTGA 1278 43.9 MDVPSVELNCESEGDSYPLLMAQPENSNSSEHIIDVTGTGDSTPSSLPHGRNSNGLNLSQPEDRPSSSTQVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHHNQASEQSSLQSSQNSSRINAPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVVTGRFKVLVEYLKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREELTQTRGATAESINALPAYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIISSLDGANRQQGDS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3372677 3377930 - Cp4.1LG11g05650.1 Cpe11g00569 477363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00569 425 CDD RING-H2_RNF111_like 362 404 - -
Cpe11g00569 425 SMART ringv_2 362 404 IPR011016 GO:0008270
Cpe11g00569 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cpe11g00569 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cpe11g00569 425 MobiDBLite consensus disorder prediction 1 96 - -
Cpe11g00569 425 Pfam Ring finger domain 363 404 IPR001841 -
Cpe11g00569 425 SMART ring_2 363 403 IPR001841 -
Cpe11g00569 425 MobiDBLite consensus disorder prediction 21 90 - -
Cpe11g00569 425 SUPERFAMILY RING/U-box 355 409 - -
Cpe11g00569 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
Cpe11g00569 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00269 Cpe-Chr7:1750519 Cpe11g00569 Cpe-Chr11:3372677 0 dispersed
Cpe11g00569 Cpe-Chr11:3372677 Cpe08g00516 Cpe-Chr8:3336974 1.79E-45 dispersed
Cpe11g00569 Cpe-Chr11:3372677 Cpe07g00261 Cpe-Chr7:1697248 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00569 - - csv:101211818 768.459