Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00573 ATGTCTGAGGAAGAGCTTCCTCCCGCGAGCCAATTGATTCCTCTGGACTTCAGCTCAGTTCAAACTATTCCTGAATCTCACTTATGGCCTAACCTTGATGAATCATCGAGGAAGATCGAACCAGACAAAATGGTCTCGATCCCGGTTGTCGATCTTAACAACGATAATGTGTCGGAGCTCATAGGGAAAGCTTGCGAGAAATGGGGAATGTTTCAGTTGATTAATCATGGTATCTCAAAAACCCTAATAGCCCAAACCGAGGAAGTGGCTCGATGTCTTTTCGCTCTTCCAAAAAGCCAGAAGATGAAGACATTACAGGCTCCCGGAAACCCCACCGGCTACAGCATGGCCGGAATATCGAAGTATTATGAGAAACTAATGTGGCATGAAGGATTCACCATCCTAGATTCTCCGGTTGATAGTTTTAAGAAACTCTGGCCATCAAACTACCAACGATTCTGTGATATAATGGAAGAATACCGACTCGAAATGAAGGCTTTAGCTGATAAGCTAATAAGTTTAATCTTCAAGTTTCTTGGCATCTCCGATGAAGAGATGGTGAAGCTATTGCCTTACATCGACCCGAACACCGGAAAACCCCACATGGCTTTGCGCTTGAACTCGTATCCGCCATGCCCTGATCCAAGCAAAGTCATTGGCCTTGCGGCCCACACCGACACCTCCCTCTTCACCATGCTTCACCAGGCACGCAAATATGGGCTACAGATCTTCAACGAGAAAGAAGGTTGGATTCCTCTAGCAAGGAAGAGCGACACACTCATTATTAACATCGGTGATTTCCTCCAAATTATATCAAATGGTCGGTTTCATAGCATTCCTCACCGGGTGATGATACAAGAGACTGAGGAGAGTACGATGTCGATGGCATTTTTCTATTATCCACCGAGTCATTTAAACGTATTACCTTATTGTAAGCCATTGAGTGAAACCCCACAGACTCCCATCTACAGAGGAGTGAACGTGAAAGAATATTTCGCCATCAAGGCCAAGCACTCGGGGAAGGGAATTCCTGCCATAACAATATGA 1047 45.18 MSEEELPPASQLIPLDFSSVQTIPESHLWPNLDESSRKIEPDKMVSIPVVDLNNDNVSELIGKACEKWGMFQLINHGISKTLIAQTEEVARCLFALPKSQKMKTLQAPGNPTGYSMAGISKYYEKLMWHEGFTILDSPVDSFKKLWPSNYQRFCDIMEEYRLEMKALADKLISLIFKFLGISDEEMVKLLPYIDPNTGKPHMALRLNSYPPCPDPSKVIGLAAHTDTSLFTMLHQARKYGLQIFNEKEGWIPLARKSDTLIINIGDFLQIISNGRFHSIPHRVMIQETEESTMSMAFFYYPPSHLNVLPYCKPLSETPQTPIYRGVNVKEYFAIKAKHSGKGIPAITI 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3403146 3404329 + Cp4.1LG11g05740.1 Cpe11g00573 477367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00573 348 Pfam 2OG-Fe(II) oxygenase superfamily 201 299 IPR044861 -
Cpe11g00573 348 Pfam non-haem dioxygenase in morphine synthesis N-terminal 47 148 IPR026992 -
Cpe11g00573 348 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 9 342 - -
Cpe11g00573 348 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 342 - -
Cpe11g00573 348 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 199 301 IPR005123 -
Cpe11g00573 348 SUPERFAMILY Clavaminate synthase-like 14 340 - -
Cpe11g00573 348 Gene3D - 10 333 IPR027443 -
Cpe11g00573 348 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 219 228 IPR001261 -
Cpe11g00573 348 PRINTS Isopenicillin N synthase signature 61 78 - -
Cpe11g00573 348 PRINTS Isopenicillin N synthase signature 224 245 - -
Cpe11g00573 348 PRINTS Isopenicillin N synthase signature 260 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00573 K04124 GA3ox; gibberellin 3beta-dioxygenase [EC:1.14.11.15] - csv:101222387 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00266 Cpe-Chr7:1732940 Cpe11g00573 Cpe-Chr11:3403146 4.20E-63 dispersed
Cpe07g00267 Cpe-Chr7:1733401 Cpe11g00573 Cpe-Chr11:3403146 3.68E-63 dispersed
Cpe07g00272 Cpe-Chr7:1786195 Cpe11g00573 Cpe-Chr11:3403146 3.14E-41 dispersed
Cpe11g00573 Cpe-Chr11:3403146 Cpe11g00579 Cpe-Chr11:3438575 0 dispersed
Cpe11g00572 Cpe-Chr11:3396500 Cpe11g00573 Cpe-Chr11:3403146 2.20E-106 tandem
Cpe11g00573 Cpe-Chr11:3403146 Cpe11g00574 Cpe-Chr11:3407557 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g431 . . . . . . . . Cmo05g00680 . . Cma05g00649 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01291 . . . . . . . . Cpe11g00573 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002692 0 1 0 0 0 2 0 2 1 2 1 2 6 1 1 6 2 0 10 2 1 1 6 1 1 1 1 4 1 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00573 Cpe_Chr11 FPKM 39.290691 43.71265 34.136047 33.647678 47.192406 51.116154 49.555275 34.432301 36.496716 36.914196