Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00581 ATGGTAGATATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATATGAAGGCTACTGCTCAGGCTTTCCAAGCAGAGGGAAAAGTGTCTTCGGAGCCTGTGGCGATCGATGCGCCTGGAGGCTTTCTTTTCGAATGGTGGTCGGTTTTCTGGGATATATTCATTGCTAGAACCAATGAGAAACACTCTGATGTTGCTGCATCTTATATTGAGCAAAGGTATGGGGAAAATGTTGGGCAGCTGTTAGATCCAAATCATTCTTCGATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCGTCAGGGCAAGTGTTACATGGTACAGCTGGGGGAATGTCTCCTCAAGTTCAATCGAGGAGCCAACAATTGCCAGGTTCCACACCGGATATAAAGAATGAGATCAACCCAGTTTTGAATCCTAGAGCTGAGGGATCACTGATGGGTATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGACTCGAGCAGCTACGTTCTGGGATCCTTCAGCAACCAAAACCTTTCATACAGGCTCCTCAACCTTTTCCTCAGCTTCAGATGTTGACACCGCAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACGTCACCTTCTGTTAACGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGACGAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCCTGCCCCGTGGAGACAACAATGACATGATGATTAAGGTTTCAAAAAATCAGCCTGGGAGAAAAAGGAAGCAGCCATTGTCGTCTTCAGGTCCAGCAAATAGCTCAGGAACAGCGAATACAGCGGGTCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGCGACGGCACTGGCACTTTTACATCCCCCTCGAATCAGTTGTGGGATGATAAAGAAATTGAATTGCAGGCTGATATGGAACGCTTTGTGGAGGATGGGTCTCTTGATGACAACGTCGACTCTTTTTTATCCCATGATGATACGGACCCTCGAGATCCTGTAGGGCGCTGTATGGATGGTGGAAAAGGATTCACGTTTACGGAGGTGAATTCTGTTCGAGCAAGCACGAGCAAAGTTTCCGCTTGCCACTTTTCATCGGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGGCCGTGTTGTGGTACACAGAAAATTTAAAACCGAAAACTTCACTTGAAGAACATCTTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGTCTTGCAACATCATCGTTCGATCGAACAGTCAGGGTTTGGGATCCCGACAATCATTGTTATTCCCTACGTACTTTTACGGGACATTCTGCATCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGACGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGCACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCAGCTGTAGATAATATCGTTTCAATTTTTGATGTTGAGACACAAGCTCGTCTGCATTCGTTTCAGGGACACACCAAAACGGTTAATTCTCTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCGGTTCGAGTATGGACACTTGCTTCGGGCAACGAGGGCGAATCCATTCACGACTTGAGCTGTAGCGGCAATAAGTTCCACTCGTGTGTTTTTCATCCCATCCAATCTAGTTTACTGTCATTAGAGCTTTGGAACACGACCGAGAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCAGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAA 2097 45.92 MVDMSQTNWEADKMLDVYIHDYLVKRDMKATAQAFQAEGKVSSEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIEQRYGENVGQLLDPNHSSILKSAAATSQSSGQVLHGTAGGMSPQVQSRSQQLPGSTPDIKNEINPVLNPRAEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQPKPFIQAPQPFPQLQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMTKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDNNDMMIKVSKNQPGRKRKQPLSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKEIELQADMERFVEDGSLDDNVDSFLSHDDTDPRDPVGRCMDGGKGFTFTEVNSVRASTSKVSACHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHLSMITDVRFSPSMPRLATSSFDRTVRVWDPDNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLSCSGNKFHSCVFHPIQSSLLSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIKLWK 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3452582 3459303 - Cp4.1LG11g05840.1 Cpe11g00581 477375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 543 - -
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 547 IPR001680 GO:0005515
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 666 698 IPR001680 GO:0005515
Cpe11g00581 698 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 4 84 IPR044716 GO:0003714
Cpe11g00581 698 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 88 280 IPR044716 GO:0003714
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 627 IPR001680 GO:0005515
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 461 IPR001680 GO:0005515
Cpe11g00581 698 MobiDBLite consensus disorder prediction 112 146 - -
Cpe11g00581 698 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 280 698 - -
Cpe11g00581 698 Pfam LisH 13 39 IPR006594 GO:0005515
Cpe11g00581 698 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 4 84 - -
Cpe11g00581 698 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 88 280 - -
Cpe11g00581 698 MobiDBLite consensus disorder prediction 112 144 - -
Cpe11g00581 698 MobiDBLite consensus disorder prediction 288 326 - -
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 666 698 - -
Cpe11g00581 698 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 280 698 IPR044716 GO:0003714
Cpe11g00581 698 SUPERFAMILY WD40 repeat-like 414 698 IPR036322 GO:0005515
Cpe11g00581 698 Gene3D - 558 698 IPR015943 GO:0005515
Cpe11g00581 698 CDD WD40 416 698 - -
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 494 IPR001680 GO:0005515
Cpe11g00581 698 MobiDBLite consensus disorder prediction 242 347 - -
Cpe11g00581 698 Pfam WD domain, G-beta repeat 458 494 IPR001680 GO:0005515
Cpe11g00581 698 Pfam WD domain, G-beta repeat 584 617 IPR001680 GO:0005515
Cpe11g00581 698 Pfam WD domain, G-beta repeat 665 698 IPR001680 GO:0005515
Cpe11g00581 698 Pfam WD domain, G-beta repeat 420 451 IPR001680 GO:0005515
Cpe11g00581 698 Pfam WD domain, G-beta repeat 502 538 IPR001680 GO:0005515
Cpe11g00581 698 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Cpe11g00581 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 462 494 - -
Cpe11g00581 698 Gene3D - 407 557 IPR015943 GO:0005515
Cpe11g00581 698 SMART WD40_4 498 538 IPR001680 GO:0005515
Cpe11g00581 698 SMART WD40_4 541 577 IPR001680 GO:0005515
Cpe11g00581 698 SMART WD40_4 580 618 IPR001680 GO:0005515
Cpe11g00581 698 SMART WD40_4 659 698 IPR001680 GO:0005515
Cpe11g00581 698 SMART WD40_4 455 494 IPR001680 GO:0005515
Cpe11g00581 698 SMART WD40_4 413 452 IPR001680 GO:0005515
Cpe11g00581 698 SMART Lish 11 43 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00581 - - - han:110898480 897.116
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00273 Cpe11g00581 CCT
Cpe07g00273 Cpe11g00581 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00273 Cpe-Chr7:1796599 Cpe11g00581 Cpe-Chr11:3452582 0 dispersed
Cpe08g00394 Cpe-Chr8:2487646 Cpe11g00581 Cpe-Chr11:3452582 3.57E-37 dispersed
Cpe11g00581 Cpe-Chr11:3452582 Cpe18g00457 Cpe-Chr18:5543573 1.48E-13 dispersed
Cpe11g00581 Cpe-Chr11:3452582 Cpe07g00268 Cpe-Chr7:1739884 5.62E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50242 PF00400 WD40 0.076 CL0186 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00581 Cpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0